Analysis of interatomic Contacts of Structural Units in PDB entry:
9RY7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RY7 entry

There are 5 chains in PDB entry 9RY7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 272
B	MET 1	GLY 272
C	MET 1	GLY 272
D	MET 1	GLY 272
E	MET 1	GLY 272

There are 65 helices in PDB entry 9RY7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	9	Right-handed 310
Helix 2	AA2	A	12	31	Right-handed alpha
Helix 3	AA3	A	32	37	Right-handed alpha
Helix 4	AA4	A	92	101	Right-handed alpha
Helix 5	AA5	A	107	128	Right-handed alpha
Helix 6	AA6	A	136	141	Right-handed alpha
Helix 7	AA7	A	142	145	Right-handed 310
Helix 8	AA8	A	151	153	Right-handed 310
Helix 9	AA9	A	154	168	Right-handed alpha
Helix 10	AB1	A	180	189	Right-handed alpha
Helix 11	AB2	A	192	196	Right-handed 310
Helix 12	AB3	A	197	204	Right-handed alpha
Helix 13	AB4	A	263	265	Right-handed 310
Helix 14	AB5	B	5	9	Right-handed 310
Helix 15	AB6	B	12	31	Right-handed alpha
Helix 16	AB7	B	32	36	Right-handed 310
Helix 17	AB8	B	92	101	Right-handed alpha
Helix 18	AB9	B	107	128	Right-handed alpha
Helix 19	AC1	B	136	141	Right-handed alpha
Helix 20	AC2	B	142	145	Right-handed 310
Helix 21	AC3	B	151	153	Right-handed 310
Helix 22	AC4	B	154	168	Right-handed alpha
Helix 23	AC5	B	180	189	Right-handed alpha
Helix 24	AC6	B	192	196	Right-handed 310
Helix 25	AC7	B	197	206	Right-handed alpha
Helix 26	AC8	B	263	265	Right-handed 310
Helix 27	AC9	C	5	9	Right-handed 310
Helix 28	AD1	C	12	31	Right-handed alpha
Helix 29	AD2	C	32	36	Right-handed 310
Helix 30	AD3	C	92	101	Right-handed alpha
Helix 31	AD4	C	107	128	Right-handed alpha
Helix 32	AD5	C	136	141	Right-handed alpha
Helix 33	AD6	C	142	145	Right-handed 310
Helix 34	AD7	C	151	153	Right-handed 310
Helix 35	AD8	C	154	168	Right-handed alpha
Helix 36	AD9	C	180	189	Right-handed alpha
Helix 37	AE1	C	192	196	Right-handed 310
Helix 38	AE2	C	197	204	Right-handed alpha
Helix 39	AE3	C	263	265	Right-handed 310
Helix 40	AE4	D	5	9	Right-handed 310
Helix 41	AE5	D	12	31	Right-handed alpha
Helix 42	AE6	D	32	37	Right-handed alpha
Helix 43	AE7	D	92	101	Right-handed alpha
Helix 44	AE8	D	107	128	Right-handed alpha
Helix 45	AE9	D	136	141	Right-handed alpha
Helix 46	AF1	D	142	145	Right-handed 310
Helix 47	AF2	D	151	153	Right-handed 310
Helix 48	AF3	D	154	168	Right-handed alpha
Helix 49	AF4	D	180	189	Right-handed alpha
Helix 50	AF5	D	192	196	Right-handed 310
Helix 51	AF6	D	197	206	Right-handed alpha
Helix 52	AF7	D	263	265	Right-handed 310
Helix 53	AF8	E	5	9	Right-handed 310
Helix 54	AF9	E	12	31	Right-handed alpha
Helix 55	AG1	E	32	36	Right-handed 310
Helix 56	AG2	E	92	101	Right-handed alpha
Helix 57	AG3	E	107	128	Right-handed alpha
Helix 58	AG4	E	136	141	Right-handed alpha
Helix 59	AG5	E	142	145	Right-handed 310
Helix 60	AG6	E	151	153	Right-handed 310
Helix 61	AG7	E	154	168	Right-handed alpha
Helix 62	AG8	E	180	189	Right-handed alpha
Helix 63	AG9	E	192	196	Right-handed 310
Helix 64	AH1	E	197	206	Right-handed alpha
Helix 65	AH2	E	263	265	Right-handed 310

There are 19 sheets in PDB entry 9RY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	229	233	parallel
Strand 3	A	248	261	anti-parallel
Strand 4	A	82	91	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	229	233	parallel
Strand 3	A	248	261	anti-parallel
Strand 4	A	238	244	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	57	first strand
Strand 2	A	74	80	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	267	271	parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	175	179	anti-parallel
Strand 5	A	210	212	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	229	233	parallel
Strand 3	B	248	261	anti-parallel
Strand 4	B	82	91	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	229	233	parallel
Strand 3	B	248	261	anti-parallel
Strand 4	B	238	244	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	57	first strand
Strand 2	B	74	80	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	267	271	parallel
Strand 3	B	219	223	anti-parallel
Strand 4	B	175	179	anti-parallel
Strand 5	B	210	212	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	229	233	parallel
Strand 3	C	248	261	anti-parallel
Strand 4	C	82	91	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	229	233	parallel
Strand 3	C	248	261	anti-parallel
Strand 4	C	238	244	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	57	first strand
Strand 2	C	74	80	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	267	271	parallel
Strand 3	C	219	223	anti-parallel
Strand 4	C	175	179	anti-parallel
Strand 5	C	210	212	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	229	244	parallel
Strand 3	D	248	261	anti-parallel
Strand 4	D	82	91	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	57	first strand
Strand 2	D	74	80	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	267	271	parallel
Strand 3	D	219	223	anti-parallel
Strand 4	D	175	179	anti-parallel
Strand 5	D	210	212	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	229	233	parallel
Strand 3	E	248	261	anti-parallel
Strand 4	E	82	91	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	229	233	parallel
Strand 3	E	248	261	anti-parallel
Strand 4	E	238	244	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	57	first strand
Strand 2	E	74	80	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	267	271	parallel
Strand 3	E	219	223	anti-parallel
Strand 4	E	175	179	anti-parallel
Strand 5	E	210	212	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RY7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RY7