Analysis of interatomic Contacts of Structural Units in PDB entry:
9RY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RY8 entry

There is 1 chain in PDB entry 9RY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24GLN 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9RY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 50Right-handed alpha
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
109 114Right-handed alpha
Helix 4
AA4
A
143 155Right-handed alpha
Helix 5
AA5
A
172 178Right-handed alpha
Helix 6
AA6
A
180 188Right-handed alpha
Helix 7
AA7
A
272 288Right-handed alpha
Helix 8
AA8
A
302 308Right-handed alpha
Helix 9
AA9
A
322 337Right-handed alpha
Helix 10
AB1
A
339 345Right-handed alpha
Helix 11
AB2
A
384 388Right-handed 310
Helix 12
AB3
A
389 400Right-handed alpha
Helix 13
AB4
A
401 406Right-handed alpha
Helix 14
AB5
A
407 412Right-handed alpha
Helix 15
AB6
A
415 422Right-handed 310
Helix 16
AB7
A
423 445Right-handed alpha
Helix 17
AB8
A
458 467Right-handed alpha
Helix 18
AB9
A
474 483Right-handed alpha
Helix 19
AC1
A
483 488Right-handed alpha
Helix 20
AC2
A
494 501Right-handed alpha
Helix 21
AC3
A
519 527Right-handed alpha
Helix 22
AC4
A
528 530Right-handed 310
Helix 23
AC5
A
549 560Right-handed alpha
Helix 24
AC6
A
574 579Right-handed 310
Helix 25
AC7
A
580 588Right-handed alpha
Helix 26
AC8
A
620 634Right-handed alpha
Helix 27
AC9
A
638 648Right-handed alpha
Helix 28
AD1
A
660 672Right-handed alpha
Helix 29
AD2
A
694 709Right-handed alpha
Helix 30
AD3
A
715 719Right-handed 310
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There are 5 sheets in PDB entry 9RY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
121 127anti-parallel
Strand 4
A
242 248anti-parallel
Strand 5
A
221 226anti-parallel
Strand 6
A
161 166parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
101 103anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 270first strand
Strand 2
A
314 320anti-parallel
Strand 3
A
356 357anti-parallel
Strand 4
A
349 350anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 609first strand
Strand 2
A
452 455parallel
Strand 3
A
367 371parallel
Strand 4
A
652 655parallel
Strand 5
A
684 687parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 565first strand
Strand 2
A
511 517anti-parallel
Strand 3
A
542 548anti-parallel
Strand 4
A
533 539anti-parallel
Strand 5
A
636 637parallel
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