Analysis of interatomic Contacts of Structural Units in PDB entry:
9RYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RYE entry

There are 3 chains in PDB entry 9RYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11PHE 597
B
 SER 5GLU 575
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 9RYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
25 44Right-handed alpha
Helix 3
AA3
A
46 56Right-handed alpha
Helix 4
AA4
A
64 120Right-handed alpha
Helix 5
AA5
A
121 128Right-handed alpha
Helix 6
AA6
A
129 150Right-handed alpha
Helix 7
AA7
A
151 173Right-handed alpha
Helix 8
AA8
A
173 182Right-handed alpha
Helix 9
AA9
A
183 222Right-handed alpha
Helix 10
AB1
A
222 230Right-handed alpha
Helix 11
AB2
A
231 286Right-handed alpha
Helix 12
AB3
A
289 313Right-handed alpha
Helix 13
AB4
A
313 333Right-handed alpha
Helix 14
AB5
A
399 408Right-handed alpha
Helix 15
AB6
A
425 427Right-handed 310
Helix 16
AB7
A
428 435Right-handed alpha
Helix 17
AB8
A
450 455Right-handed alpha
Helix 18
AB9
A
462 473Right-handed alpha
Helix 19
AC1
A
475 481Right-handed alpha
Helix 20
AC2
A
484 487Right-handed 310
Helix 21
AC3
A
491 495Right-handed 310
Helix 22
AC4
A
498 512Right-handed alpha
Helix 23
AC5
A
529 545Right-handed alpha
Helix 24
AC6
A
555 560Right-handed 310
Helix 25
AC7
A
578 586Right-handed alpha
Helix 26
AC8
A
587 597Right-handed alpha
Helix 27
AC9
B
6 19Right-handed alpha
Helix 28
AD1
B
20 39Right-handed alpha
Helix 29
AD2
B
40 53Right-handed alpha
Helix 30
AD3
B
59 103Right-handed alpha
Helix 31
AD4
B
106 113Right-handed alpha
Helix 32
AD5
B
114 134Right-handed alpha
Helix 33
AD6
B
134 158Right-handed alpha
Helix 34
AD7
B
159 167Right-handed alpha
Helix 35
AD8
B
168 207Right-handed alpha
Helix 36
AD9
B
207 215Right-handed alpha
Helix 37
AE1
B
216 243Right-handed alpha
Helix 38
AE2
B
243 270Right-handed alpha
Helix 39
AE3
B
274 317Right-handed alpha
Helix 40
AE4
B
331 335Right-handed 310
Helix 41
AE5
B
376 384Right-handed alpha
Helix 42
AE6
B
406 413Right-handed alpha
Helix 43
AE7
B
427 433Right-handed alpha
Helix 44
AE8
B
440 451Right-handed alpha
Helix 45
AE9
B
453 459Right-handed alpha
Helix 46
AF1
B
462 466Right-handed 310
Helix 47
AF2
B
469 473Right-handed 310
Helix 48
AF3
B
476 490Right-handed alpha
Helix 49
AF4
B
506 519Right-handed alpha
Helix 50
AF5
B
532 537Right-handed alpha
Helix 51
AF6
B
555 561Right-handed alpha
Helix 52
AF7
B
563 575Right-handed alpha
Helix 53
AF8
C
87 91Right-handed 310
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There are 7 sheets in PDB entry 9RYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 522parallel
Strand 3
A
549 552parallel
Strand 4
A
388 393parallel
Strand 5
A
565 568parallel
Strand 6
A
575 577anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
489 490anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 546parallel
Strand 6
B
549 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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