Analysis of interatomic Contacts of Structural Units in PDB entry:
9S00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S00 entry

There are 3 chains in PDB entry 9S00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 44	ASN 597
B	ASP 46	ASN 597
C	VAL 44	ASP 188

There are 48 helices in PDB entry 9S00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	52	Right-handed alpha
Helix 2	AA2	A	54	61	Right-handed alpha
Helix 3	AA3	A	69	75	Right-handed alpha
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	99	105	Right-handed alpha
Helix 6	AA6	A	106	110	Right-handed 310
Helix 7	AA7	A	116	128	Right-handed alpha
Helix 8	AA8	A	163	176	Right-handed alpha
Helix 9	AA9	A	208	216	Right-handed alpha
Helix 10	AB1	A	216	225	Right-handed alpha
Helix 11	AB2	A	243	258	Right-handed alpha
Helix 12	AB3	A	265	268	Right-handed 310
Helix 13	AB4	A	312	327	Right-handed alpha
Helix 14	AB5	A	343	360	Right-handed alpha
Helix 15	AB6	A	361	364	Right-handed 310
Helix 16	AB7	A	474	476	Right-handed 310
Helix 17	AB8	B	47	52	Right-handed alpha
Helix 18	AB9	B	54	61	Right-handed alpha
Helix 19	AC1	B	69	75	Right-handed alpha
Helix 20	AC2	B	86	90	Right-handed 310
Helix 21	AC3	B	99	105	Right-handed alpha
Helix 22	AC4	B	106	110	Right-handed 310
Helix 23	AC5	B	116	128	Right-handed alpha
Helix 24	AC6	B	163	176	Right-handed alpha
Helix 25	AC7	B	208	216	Right-handed alpha
Helix 26	AC8	B	216	225	Right-handed alpha
Helix 27	AC9	B	243	258	Right-handed alpha
Helix 28	AD1	B	265	268	Right-handed 310
Helix 29	AD2	B	312	326	Right-handed alpha
Helix 30	AD3	B	343	360	Right-handed alpha
Helix 31	AD4	B	360	365	Right-handed alpha
Helix 32	AD5	B	474	476	Right-handed 310
Helix 33	AD6	C	45	52	Right-handed alpha
Helix 34	AD7	C	54	61	Right-handed alpha
Helix 35	AD8	C	69	75	Right-handed alpha
Helix 36	AD9	C	86	90	Right-handed 310
Helix 37	AE1	C	99	105	Right-handed alpha
Helix 38	AE2	C	106	110	Right-handed 310
Helix 39	AE3	C	116	128	Right-handed alpha
Helix 40	AE4	C	163	176	Right-handed alpha
Helix 41	AE5	C	208	216	Right-handed alpha
Helix 42	AE6	C	216	225	Right-handed alpha
Helix 43	AE7	C	243	258	Right-handed alpha
Helix 44	AE8	C	265	268	Right-handed 310
Helix 45	AE9	C	312	326	Right-handed alpha
Helix 46	AF1	C	343	360	Right-handed alpha
Helix 47	AF2	C	360	365	Right-handed alpha
Helix 48	AF3	C	474	476	Right-handed 310

There are 24 sheets in PDB entry 9S00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	233	236	parallel
Strand 3	A	178	183	parallel
Strand 4	A	131	137	parallel
Strand 5	A	62	66	parallel
Strand 6	A	329	334	parallel
Strand 7	A	291	296	parallel
Strand 8	A	275	277	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	81	82	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	384	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	445	451	anti-parallel
Strand 4	A	410	415	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	430	434	anti-parallel
Strand 3	A	423	427	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	509	516	parallel
Strand 3	A	477	479	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	461	463	first strand
Strand 2	A	509	516	parallel
Strand 3	A	570	580	anti-parallel
Strand 4	A	533	540	anti-parallel
Strand 5	A	545	551	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	472	first strand
Strand 2	A	587	595	anti-parallel
Strand 3	A	520	529	anti-parallel
Strand 4	A	557	566	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	482	489	first strand
Strand 2	A	495	502	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	233	236	parallel
Strand 3	B	178	183	parallel
Strand 4	B	131	137	parallel
Strand 5	B	62	66	parallel
Strand 6	B	329	334	parallel
Strand 7	B	291	296	parallel
Strand 8	B	275	277	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	81	82	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	384	first strand
Strand 2	B	387	392	anti-parallel
Strand 3	B	445	451	anti-parallel
Strand 4	B	410	415	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	430	434	anti-parallel
Strand 3	B	423	427	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	509	516	parallel
Strand 3	B	477	479	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	461	463	first strand
Strand 2	B	509	516	parallel
Strand 3	B	570	580	anti-parallel
Strand 4	B	533	540	anti-parallel
Strand 5	B	545	551	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	472	first strand
Strand 2	B	587	595	anti-parallel
Strand 3	B	520	529	anti-parallel
Strand 4	B	557	566	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	482	489	first strand
Strand 2	B	495	502	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	233	236	parallel
Strand 3	C	178	183	parallel
Strand 4	C	131	137	parallel
Strand 5	C	62	66	parallel
Strand 6	C	329	334	parallel
Strand 7	C	291	296	parallel
Strand 8	C	275	277	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	81	82	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	384	first strand
Strand 2	C	387	392	anti-parallel
Strand 3	C	445	451	anti-parallel
Strand 4	C	410	415	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	403	first strand
Strand 2	C	430	434	anti-parallel
Strand 3	C	423	427	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	C	509	516	parallel
Strand 3	C	477	479	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	461	463	first strand
Strand 2	C	509	516	parallel
Strand 3	C	570	580	anti-parallel
Strand 4	C	533	540	anti-parallel
Strand 5	C	545	551	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	472	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	520	529	anti-parallel
Strand 4	C	557	566	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	482	489	first strand
Strand 2	C	495	502	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S00

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S00