Analysis of interatomic Contacts of Structural Units in PDB entry:
9S09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S09 entry

There are 4 chains in PDB entry 9S09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 79TRP 275
B
 PRO 80TRP 275
C
 ARG 79LEU 274
D
 PRO 80LEU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9S09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 81Right-handed 310
Helix 2
AA2
A
82 93Right-handed alpha
Helix 3
AA3
A
95 119Right-handed alpha
Helix 4
AA4
A
119 133Right-handed alpha
Helix 5
AA5
A
137 160Right-handed alpha
Helix 6
AA6
A
178 191Right-handed alpha
Helix 7
AA7
A
203 215Right-handed alpha
Helix 8
AA8
A
226 231Right-handed alpha
Helix 9
AA9
A
252 260Right-handed alpha
Helix 10
AB1
A
266 275Right-handed alpha
Helix 11
AB2
B
81 93Right-handed alpha
Helix 12
AB3
B
95 119Right-handed alpha
Helix 13
AB4
B
119 133Right-handed alpha
Helix 14
AB5
B
137 160Right-handed alpha
Helix 15
AB6
B
178 190Right-handed alpha
Helix 16
AB7
B
203 214Right-handed alpha
Helix 17
AB8
B
226 231Right-handed alpha
Helix 18
AB9
B
252 260Right-handed alpha
Helix 19
AC1
B
267 273Right-handed alpha
Helix 20
AC2
C
79 81Right-handed 310
Helix 21
AC3
C
82 93Right-handed alpha
Helix 22
AC4
C
95 119Right-handed alpha
Helix 23
AC5
C
119 133Right-handed alpha
Helix 24
AC6
C
137 160Right-handed alpha
Helix 25
AC7
C
178 190Right-handed alpha
Helix 26
AC8
C
203 214Right-handed alpha
Helix 27
AC9
C
226 231Right-handed alpha
Helix 28
AD1
C
252 260Right-handed alpha
Helix 29
AD2
C
266 273Right-handed alpha
Helix 30
AD3
D
81 94Right-handed alpha
Helix 31
AD4
D
95 119Right-handed alpha
Helix 32
AD5
D
119 133Right-handed alpha
Helix 33
AD6
D
137 159Right-handed alpha
Helix 34
AD7
D
178 191Right-handed alpha
Helix 35
AD8
D
203 215Right-handed alpha
Helix 36
AD9
D
226 231Right-handed alpha
Helix 37
AE1
D
252 260Right-handed alpha
Helix 38
AE2
D
267 276Right-handed alpha
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There are 4 sheets in PDB entry 9S09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
167 170parallel
Strand 3
A
218 222parallel
Strand 4
A
244 247parallel
Strand 5
A
262 263parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
167 170parallel
Strand 3
B
218 222parallel
Strand 4
B
243 247parallel
Strand 5
B
262 263parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 199first strand
Strand 2
C
167 170parallel
Strand 3
C
218 222parallel
Strand 4
C
244 247parallel
Strand 5
C
262 263parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
195 197first strand
Strand 2
D
167 170parallel
Strand 3
D
218 222parallel
Strand 4
D
243 247parallel
Strand 5
D
262 263parallel
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