Analysis of interatomic Contacts of Structural Units in PDB entry:
9S0V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S0V entry

There are 5 chains in PDB entry 9S0V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 18	PRO 499
B	LEU 18	PRO 499
C	LEU 18	PRO 499
D	LEU 18	ALA 500
E	LEU 18	PRO 499

There are101 helices in PDB entry 9S0V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	25	43	Right-handed alpha
Helix 3	AA3	A	63	77	Right-handed alpha
Helix 4	AA4	A	109	120	Right-handed alpha
Helix 5	AA5	A	138	142	Right-handed 310
Helix 6	AA6	A	149	157	Right-handed alpha
Helix 7	AA7	A	171	179	Right-handed alpha
Helix 8	AA8	A	193	199	Right-handed alpha
Helix 9	AA9	A	203	211	Right-handed alpha
Helix 10	AB1	A	223	227	Right-handed 310
Helix 11	AB2	A	251	260	Right-handed alpha
Helix 12	AB3	A	271	278	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	308	321	Right-handed alpha
Helix 15	AB6	A	334	342	Right-handed alpha
Helix 16	AB7	A	344	366	Right-handed alpha
Helix 17	AB8	A	430	434	Right-handed 310
Helix 18	AB9	A	467	471	Right-handed 310
Helix 19	AC1	A	478	489	Right-handed alpha
Helix 20	AC2	B	20	24	Right-handed 310
Helix 21	AC3	B	25	43	Right-handed alpha
Helix 22	AC4	B	63	77	Right-handed alpha
Helix 23	AC5	B	87	92	Right-handed 310
Helix 24	AC6	B	109	120	Right-handed alpha
Helix 25	AC7	B	138	142	Right-handed 310
Helix 26	AC8	B	149	157	Right-handed alpha
Helix 27	AC9	B	171	176	Right-handed alpha
Helix 28	AD1	B	188	192	Right-handed 310
Helix 29	AD2	B	193	200	Right-handed alpha
Helix 30	AD3	B	203	211	Right-handed alpha
Helix 31	AD4	B	251	260	Right-handed alpha
Helix 32	AD5	B	271	278	Right-handed alpha
Helix 33	AD6	B	308	321	Right-handed alpha
Helix 34	AD7	B	334	342	Right-handed alpha
Helix 35	AD8	B	344	366	Right-handed alpha
Helix 36	AD9	B	430	434	Right-handed 310
Helix 37	AE1	B	467	471	Right-handed 310
Helix 38	AE2	B	479	488	Right-handed alpha
Helix 39	AE3	B	494	498	Right-handed 310
Helix 40	AE4	C	21	24	Right-handed 310
Helix 41	AE5	C	25	43	Right-handed alpha
Helix 42	AE6	C	63	77	Right-handed alpha
Helix 43	AE7	C	109	120	Right-handed alpha
Helix 44	AE8	C	138	142	Right-handed 310
Helix 45	AE9	C	149	157	Right-handed alpha
Helix 46	AF1	C	171	179	Right-handed alpha
Helix 47	AF2	C	188	192	Right-handed 310
Helix 48	AF3	C	193	199	Right-handed alpha
Helix 49	AF4	C	203	211	Right-handed alpha
Helix 50	AF5	C	251	260	Right-handed alpha
Helix 51	AF6	C	271	278	Right-handed alpha
Helix 52	AF7	C	297	301	Right-handed 310
Helix 53	AF8	C	308	321	Right-handed alpha
Helix 54	AF9	C	334	342	Right-handed alpha
Helix 55	AG1	C	344	366	Right-handed alpha
Helix 56	AG2	C	430	434	Right-handed 310
Helix 57	AG3	C	467	471	Right-handed 310
Helix 58	AG4	C	479	488	Right-handed alpha
Helix 59	AG5	C	494	498	Right-handed 310
Helix 60	AG6	D	20	24	Right-handed 310
Helix 61	AG7	D	25	43	Right-handed alpha
Helix 62	AG8	D	63	77	Right-handed alpha
Helix 63	AG9	D	88	92	Right-handed 310
Helix 64	AH1	D	109	120	Right-handed alpha
Helix 65	AH2	D	138	142	Right-handed 310
Helix 66	AH3	D	149	157	Right-handed alpha
Helix 67	AH4	D	171	179	Right-handed alpha
Helix 68	AH5	D	188	192	Right-handed 310
Helix 69	AH6	D	193	199	Right-handed alpha
Helix 70	AH7	D	203	211	Right-handed alpha
Helix 71	AH8	D	251	259	Right-handed alpha
Helix 72	AH9	D	271	278	Right-handed alpha
Helix 73	AI1	D	297	301	Right-handed 310
Helix 74	AI2	D	308	321	Right-handed alpha
Helix 75	AI3	D	334	342	Right-handed alpha
Helix 76	AI4	D	344	366	Right-handed alpha
Helix 77	AI5	D	430	434	Right-handed 310
Helix 78	AI6	D	467	471	Right-handed 310
Helix 79	AI7	D	478	489	Right-handed alpha
Helix 80	AI8	D	494	498	Right-handed 310
Helix 81	AI9	E	21	24	Right-handed 310
Helix 82	AJ1	E	25	43	Right-handed alpha
Helix 83	AJ2	E	63	77	Right-handed alpha
Helix 84	AJ3	E	109	120	Right-handed alpha
Helix 85	AJ4	E	138	142	Right-handed 310
Helix 86	AJ5	E	149	157	Right-handed alpha
Helix 87	AJ6	E	171	176	Right-handed alpha
Helix 88	AJ7	E	188	192	Right-handed 310
Helix 89	AJ8	E	193	199	Right-handed alpha
Helix 90	AJ9	E	203	212	Right-handed alpha
Helix 91	AK1	E	223	227	Right-handed 310
Helix 92	AK2	E	251	260	Right-handed alpha
Helix 93	AK3	E	271	278	Right-handed alpha
Helix 94	AK4	E	297	301	Right-handed 310
Helix 95	AK5	E	308	321	Right-handed alpha
Helix 96	AK6	E	334	342	Right-handed alpha
Helix 97	AK7	E	344	366	Right-handed alpha
Helix 98	AK8	E	430	434	Right-handed 310
Helix 99	AK9	E	467	471	Right-handed 310
Helix 100	AL1	E	479	489	Right-handed alpha
Helix 101	AL2	E	494	498	Right-handed 310

There are 21 sheets in PDB entry 9S0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	269	first strand
Strand 2	A	285	289	parallel
Strand 3	A	217	221	parallel
Strand 4	A	160	168	parallel
Strand 5	A	327	332	parallel
Strand 6	A	53	58	parallel
Strand 7	A	371	376	parallel
Strand 8	A	459	464	anti-parallel
Strand 9	A	94	99	anti-parallel
Strand 10	A	474	476	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	381	first strand
Strand 2	A	454	455	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	385	first strand
Strand 2	A	413	415	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	447	448	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	427	428	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	269	first strand
Strand 2	B	285	289	parallel
Strand 3	B	217	221	parallel
Strand 4	B	160	168	parallel
Strand 5	B	327	332	parallel
Strand 6	B	53	58	parallel
Strand 7	B	371	376	parallel
Strand 8	B	459	464	anti-parallel
Strand 9	B	94	99	anti-parallel
Strand 10	B	474	476	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	381	first strand
Strand 2	B	454	455	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	413	415	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	424	first strand
Strand 2	B	427	428	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	285	289	parallel
Strand 3	C	217	221	parallel
Strand 4	C	160	168	parallel
Strand 5	C	327	332	parallel
Strand 6	C	53	58	parallel
Strand 7	C	371	376	parallel
Strand 8	C	459	464	anti-parallel
Strand 9	C	94	99	anti-parallel
Strand 10	C	474	476	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	454	455	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	413	415	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	424	first strand
Strand 2	C	427	428	anti-parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	269	first strand
Strand 2	D	285	289	parallel
Strand 3	D	217	221	parallel
Strand 4	D	160	168	parallel
Strand 5	D	327	332	parallel
Strand 6	D	53	58	parallel
Strand 7	D	371	376	parallel
Strand 8	D	459	464	anti-parallel
Strand 9	D	94	99	anti-parallel
Strand 10	D	474	476	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	381	first strand
Strand 2	D	454	455	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	383	385	first strand
Strand 2	D	413	418	anti-parallel
Strand 3	D	445	448	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	424	first strand
Strand 2	D	427	428	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	269	first strand
Strand 2	E	285	289	parallel
Strand 3	E	217	221	parallel
Strand 4	E	160	168	parallel
Strand 5	E	327	332	parallel
Strand 6	E	53	58	parallel
Strand 7	E	371	376	parallel
Strand 8	E	459	464	anti-parallel
Strand 9	E	94	99	anti-parallel
Strand 10	E	474	476	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	380	381	first strand
Strand 2	E	454	455	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	383	385	first strand
Strand 2	E	413	418	anti-parallel
Strand 3	E	445	448	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	424	first strand
Strand 2	E	427	428	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S0V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S0V