Analysis of interatomic Contacts of Structural Units in PDB entry:
9S0X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S0X entry

There are 3 chains in PDB entry 9S0X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	LYS 488
B	LYS 21	LYS 488
C	THR 22	GLU 327

There are 94 helices in PDB entry 9S0X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	30	Right-handed alpha
Helix 2	AA2	A	32	43	Right-handed alpha
Helix 3	AA3	A	51	55	Right-handed 310
Helix 4	AA4	A	66	68	Right-handed 310
Helix 5	AA5	A	73	75	Right-handed 310
Helix 6	AA6	A	76	81	Right-handed alpha
Helix 7	AA7	A	84	90	Right-handed alpha
Helix 8	AA8	A	91	95	Right-handed 310
Helix 9	AA9	A	101	112	Right-handed alpha
Helix 10	AB1	A	138	143	Right-handed alpha
Helix 11	AB2	A	148	161	Right-handed alpha
Helix 12	AB3	A	181	188	Right-handed alpha
Helix 13	AB4	A	193	198	Right-handed alpha
Helix 14	AB5	A	211	219	Right-handed alpha
Helix 15	AB6	A	219	231	Right-handed alpha
Helix 16	AB7	A	246	261	Right-handed alpha
Helix 17	AB8	A	268	271	Right-handed 310
Helix 18	AB9	A	288	292	Right-handed 310
Helix 19	AC1	A	317	331	Right-handed alpha
Helix 20	AC2	A	348	366	Right-handed alpha
Helix 21	AC3	A	367	369	Right-handed 310
Helix 22	AC4	A	389	395	Right-handed alpha
Helix 23	AC5	A	432	435	Right-handed 310
Helix 24	AC6	A	468	472	Right-handed 310
Helix 25	AC7	B	24	31	Right-handed alpha
Helix 26	AC8	B	32	43	Right-handed alpha
Helix 27	AC9	B	51	55	Right-handed 310
Helix 28	AD1	B	66	68	Right-handed 310
Helix 29	AD2	B	73	75	Right-handed 310
Helix 30	AD3	B	76	81	Right-handed alpha
Helix 31	AD4	B	84	90	Right-handed alpha
Helix 32	AD5	B	91	95	Right-handed 310
Helix 33	AD6	B	101	112	Right-handed alpha
Helix 34	AD7	B	138	143	Right-handed alpha
Helix 35	AD8	B	148	161	Right-handed alpha
Helix 36	AD9	B	181	188	Right-handed alpha
Helix 37	AE1	B	193	198	Right-handed alpha
Helix 38	AE2	B	211	219	Right-handed alpha
Helix 39	AE3	B	219	231	Right-handed alpha
Helix 40	AE4	B	246	261	Right-handed alpha
Helix 41	AE5	B	268	271	Right-handed 310
Helix 42	AE6	B	288	292	Right-handed 310
Helix 43	AE7	B	317	331	Right-handed alpha
Helix 44	AE8	B	348	366	Right-handed alpha
Helix 45	AE9	B	367	369	Right-handed 310
Helix 46	AF1	B	389	395	Right-handed alpha
Helix 47	AF2	B	468	472	Right-handed 310
Helix 48	AF3	C	24	30	Right-handed alpha
Helix 49	AF4	C	32	43	Right-handed alpha
Helix 50	AF5	C	51	55	Right-handed 310
Helix 51	AF6	C	66	68	Right-handed 310
Helix 52	AF7	C	73	75	Right-handed 310
Helix 53	AF8	C	76	81	Right-handed alpha
Helix 54	AF9	C	84	89	Right-handed alpha
Helix 55	AG1	C	90	95	Right-handed alpha
Helix 56	AG2	C	101	112	Right-handed alpha
Helix 57	AG3	C	138	143	Right-handed alpha
Helix 58	AG4	C	148	161	Right-handed alpha
Helix 59	AG5	C	181	188	Right-handed alpha
Helix 60	AG6	C	193	198	Right-handed alpha
Helix 61	AG7	C	211	219	Right-handed alpha
Helix 62	AG8	C	219	231	Right-handed alpha
Helix 63	AG9	C	246	261	Right-handed alpha
Helix 64	AH1	C	268	271	Right-handed 310
Helix 65	AH2	C	288	292	Right-handed 310
Helix 66	AH3	C	317	331	Right-handed alpha
Helix 67	AH4	C	348	366	Right-handed alpha
Helix 68	AH5	C	367	369	Right-handed 310
Helix 69	AH6	C	389	396	Right-handed alpha
Helix 70	AH7	C	432	434	Right-handed 310
Helix 71	AH8	C	435	440	Right-handed alpha
Helix 72	AH9	C	468	472	Right-handed 310
Helix 73	AI1	D	24	30	Right-handed alpha
Helix 74	AI2	D	32	43	Right-handed alpha
Helix 75	AI3	D	51	55	Right-handed 310
Helix 76	AI4	D	66	68	Right-handed 310
Helix 77	AI5	D	73	75	Right-handed 310
Helix 78	AI6	D	76	81	Right-handed alpha
Helix 79	AI7	D	84	90	Right-handed alpha
Helix 80	AI8	D	91	95	Right-handed 310
Helix 81	AI9	D	101	112	Right-handed alpha
Helix 82	AJ1	D	138	143	Right-handed alpha
Helix 83	AJ2	D	148	161	Right-handed alpha
Helix 84	AJ3	D	181	188	Right-handed alpha
Helix 85	AJ4	D	193	198	Right-handed alpha
Helix 86	AJ5	D	211	219	Right-handed alpha
Helix 87	AJ6	D	219	231	Right-handed alpha
Helix 88	AJ7	D	246	261	Right-handed alpha
Helix 89	AJ8	D	268	271	Right-handed 310
Helix 90	AJ9	D	288	292	Right-handed 310
Helix 91	AK1	D	317	331	Right-handed alpha
Helix 92	AK2	D	348	366	Right-handed alpha
Helix 93	AK3	D	367	369	Right-handed 310
Helix 94	AK4	D	468	472	Right-handed 310

There are 16 sheets in PDB entry 9S0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	236	238	parallel
Strand 3	A	163	168	parallel
Strand 4	A	116	122	parallel
Strand 5	A	44	48	parallel
Strand 6	A	334	339	parallel
Strand 7	A	297	301	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	63	64	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	380	first strand
Strand 2	A	408	413	anti-parallel
Strand 3	A	416	421	anti-parallel
Strand 4	A	477	483	anti-parallel
Strand 5	A	442	447	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	429	431	first strand
Strand 2	A	462	466	anti-parallel
Strand 3	A	455	459	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	266	first strand
Strand 2	B	236	238	parallel
Strand 3	B	163	168	parallel
Strand 4	B	116	122	parallel
Strand 5	B	44	48	parallel
Strand 6	B	334	339	parallel
Strand 7	B	297	301	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	63	64	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	380	first strand
Strand 2	B	408	413	anti-parallel
Strand 3	B	416	421	anti-parallel
Strand 4	B	477	483	anti-parallel
Strand 5	B	442	447	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	429	431	first strand
Strand 2	B	462	466	anti-parallel
Strand 3	B	455	459	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	266	first strand
Strand 2	C	236	238	parallel
Strand 3	C	163	168	parallel
Strand 4	C	116	122	parallel
Strand 5	C	44	48	parallel
Strand 6	C	334	339	parallel
Strand 7	C	297	301	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	63	64	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	380	first strand
Strand 2	C	408	413	anti-parallel
Strand 3	C	416	421	anti-parallel
Strand 4	C	477	483	anti-parallel
Strand 5	C	442	447	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	429	431	first strand
Strand 2	C	462	466	anti-parallel
Strand 3	C	455	459	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	266	first strand
Strand 2	D	236	238	parallel
Strand 3	D	163	168	parallel
Strand 4	D	116	122	parallel
Strand 5	D	44	48	parallel
Strand 6	D	334	339	parallel
Strand 7	D	297	301	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	63	64	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	408	413	anti-parallel
Strand 3	D	416	421	anti-parallel
Strand 4	D	477	483	anti-parallel
Strand 5	D	442	447	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	429	431	first strand
Strand 2	D	462	466	anti-parallel
Strand 3	D	455	459	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S0X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S0X