Analysis of interatomic Contacts of Structural Units in PDB entry:
9S0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S0Z entry

There are 2 chains in PDB entry 9S0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 104	LEU 862
C	U 1	C 5

There are 21 helices in PDB entry 9S0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	143	153	Right-handed alpha
Helix 2	AA2	B	154	159	Right-handed alpha
Helix 3	AA3	B	206	223	Right-handed alpha
Helix 4	AA4	B	279	289	Right-handed alpha
Helix 5	AA5	B	299	306	Right-handed alpha
Helix 6	AA6	B	346	350	Right-handed alpha
Helix 7	AA7	B	400	407	Right-handed alpha
Helix 8	AA8	B	407	412	Right-handed alpha
Helix 9	AA9	B	414	432	Right-handed alpha
Helix 10	AB1	B	432	443	Right-handed alpha
Helix 11	AB2	B	505	524	Right-handed alpha
Helix 12	AB3	B	538	550	Right-handed alpha
Helix 13	AB4	B	565	579	Right-handed alpha
Helix 14	AB5	B	597	614	Right-handed alpha
Helix 15	AB6	B	673	691	Right-handed alpha
Helix 16	AB7	B	709	716	Right-handed alpha
Helix 17	AB8	B	716	727	Right-handed alpha
Helix 18	AB9	B	805	816	Right-handed alpha
Helix 19	AC1	B	817	819	Right-handed 310
Helix 20	AC2	B	830	846	Right-handed alpha
Helix 21	AC3	B	852	856	Right-handed 310

There are 9 sheets in PDB entry 9S0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	664	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	627	634	anti-parallel
Strand 4	B	697	703	parallel
Strand 5	B	735	742	parallel
Strand 6	B	793	800	anti-parallel
Strand 7	B	777	781	anti-parallel
Strand 8	B	764	766	anti-parallel
Strand 9	B	451	457	anti-parallel
Strand 10	B	111	117	anti-parallel
Strand 11	B	749	752	anti-parallel
Strand 12	B	757	758	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	259	first strand
Strand 2	B	264	267	anti-parallel
Strand 3	B	119	124	anti-parallel
Strand 4	B	444	446	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	192	202	anti-parallel
Strand 3	B	130	134	anti-parallel
Strand 4	B	168	171	anti-parallel
Strand 5	B	163	164	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	192	202	anti-parallel
Strand 3	B	179	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	232	234	anti-parallel
Strand 3	B	252	253	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	247	250	anti-parallel
Strand 3	B	273	276	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	308	311	anti-parallel
Strand 3	B	388	391	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	464	first strand
Strand 2	B	469	470	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	535	first strand
Strand 2	B	498	502	parallel
Strand 3	B	557	561	parallel
Strand 4	B	584	588	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S0Z