Analysis of interatomic Contacts of Structural Units in PDB entry:
9S11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S11 entry

There is 1 chain in PDB entry 9S11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 787
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9S11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
76 78Right-handed 310
Helix 3
AA3
A
173 175Right-handed 310
Helix 4
AA4
A
224 226Right-handed 310
Helix 5
AA5
A
413 417Right-handed 310
Helix 6
AA6
A
428 431Right-handed 310
Helix 7
AA7
A
475 479Right-handed 310
Helix 8
AA8
A
579 584Right-handed alpha
Helix 9
AA9
A
585 589Right-handed 310
Helix 10
AB1
A
621 633Right-handed alpha
Helix 11
AB2
A
634 636Right-handed 310
Helix 12
AB3
A
656 664Right-handed alpha
Helix 13
AB4
A
668 677Right-handed alpha
Helix 14
AB5
A
723 737Right-handed alpha
Helix 15
AB6
A
767 774Right-handed alpha
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There are 15 sheets in PDB entry 9S11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
98 99anti-parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
49 54anti-parallel
Strand 5
A
6 11anti-parallel
Strand 6
A
148 151anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
34 37anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 74first strand
Strand 2
A
85 88anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
110 112anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
135 137anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
246 250anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
182 185anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
212 213anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
281 283anti-parallel
Strand 4
A
268 269anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
433 437anti-parallel
Strand 3
A
306 310anti-parallel
Strand 4
A
340 345anti-parallel
Strand 5
A
351 356anti-parallel
Strand 6
A
387 388anti-parallel
Strand 7
A
403 404anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
325 328anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
550 553anti-parallel
Strand 3
A
518 520anti-parallel
Strand 4
A
512 515anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 533first strand
Strand 2
A
536 539anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 558first strand
Strand 2
A
566 570anti-parallel
Strand 3
A
741 745anti-parallel
Strand 4
A
709 715parallel
Strand 5
A
702 706anti-parallel
Strand 6
A
684 688anti-parallel
Strand 7
A
650 654anti-parallel
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