Analysis of interatomic Contacts of Structural Units in PDB entry:
9S1L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S1L entry

There are 16 chains in PDB entry 9S1L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLU 49	ARG 242
2	GLU 56	ALA 258
3	LEU 48	LEU 260
4	LYS 55	SER 252
A	ALA 27	GLY 750
B	ALA 2	GLY 734
C	SER 2	TYR 81
D	THR 63	ASP 202
E	ILE 79	VAL 141
F	ASP 79	ASP 233
G	LEU 70	PHE 167
H	TYR 55	LYS 148
I	ASP 3	LYS 34
J	ARG 2	PHE 41
K	PHE 47	LYS 124
L	GLY 63	ILE 214

There are135 helices in PDB entry 9S1L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	78	109	Right-handed alpha
Helix 2	AA2	1	115	122	Right-handed 310
Helix 3	AA3	1	139	160	Right-handed alpha
Helix 4	AA4	1	171	175	Right-handed 310
Helix 5	AA5	1	182	214	Right-handed alpha
Helix 6	AA6	1	218	229	Right-handed alpha
Helix 7	AA7	1	235	240	Right-handed alpha
Helix 8	AA8	2	88	123	Right-handed alpha
Helix 9	AA9	2	132	136	Right-handed 310
Helix 10	AB1	2	141	166	Right-handed alpha
Helix 11	AB2	2	190	195	Right-handed alpha
Helix 12	AB3	2	203	236	Right-handed alpha
Helix 13	AB4	2	238	249	Right-handed alpha
Helix 14	AB5	3	54	58	Right-handed 310
Helix 15	AB6	3	85	107	Right-handed alpha
Helix 16	AB7	3	108	117	Right-handed alpha
Helix 17	AB8	3	120	124	Right-handed 310
Helix 18	AB9	3	126	130	Right-handed 310
Helix 19	AC1	3	144	169	Right-handed alpha
Helix 20	AC2	3	171	175	Right-handed 310
Helix 21	AC3	3	182	186	Right-handed 310
Helix 22	AC4	3	207	239	Right-handed alpha
Helix 23	AC5	3	242	253	Right-handed alpha
Helix 24	AC6	4	86	121	Right-handed alpha
Helix 25	AC7	4	139	164	Right-handed alpha
Helix 26	AC8	4	188	192	Right-handed 310
Helix 27	AC9	4	199	228	Right-handed alpha
Helix 28	AD1	4	230	241	Right-handed alpha
Helix 29	AD2	4	242	245	Right-handed 310
Helix 30	AD3	4	246	251	Right-handed alpha
Helix 31	AD4	A	43	52	Right-handed alpha
Helix 32	AD5	A	55	60	Right-handed alpha
Helix 33	AD6	A	62	95	Right-handed alpha
Helix 34	AD7	A	97	104	Right-handed alpha
Helix 35	AD8	A	120	125	Right-handed 310
Helix 36	AD9	A	140	149	Right-handed alpha
Helix 37	AE1	A	154	180	Right-handed alpha
Helix 38	AE2	A	184	190	Right-handed alpha
Helix 39	AE3	A	191	201	Right-handed alpha
Helix 40	AE4	A	203	217	Right-handed alpha
Helix 41	AE5	A	217	228	Right-handed alpha
Helix 42	AE6	A	236	243	Right-handed alpha
Helix 43	AE7	A	243	251	Right-handed alpha
Helix 44	AE8	A	252	256	Right-handed 310
Helix 45	AE9	A	258	263	Right-handed alpha
Helix 46	AF1	A	266	272	Right-handed 310
Helix 47	AF2	A	287	306	Right-handed alpha
Helix 48	AF3	A	318	325	Right-handed alpha
Helix 49	AF4	A	337	345	Right-handed alpha
Helix 50	AF5	A	345	371	Right-handed alpha
Helix 51	AF6	A	380	413	Right-handed alpha
Helix 52	AF7	A	421	428	Right-handed alpha
Helix 53	AF8	A	430	463	Right-handed alpha
Helix 54	AF9	A	464	468	Right-handed 310
Helix 55	AG1	A	478	490	Right-handed alpha
Helix 56	AG2	A	527	554	Right-handed alpha
Helix 57	AG3	A	563	567	Right-handed 310
Helix 58	AG4	A	576	580	Right-handed 310
Helix 59	AG5	A	585	616	Right-handed alpha
Helix 60	AG6	A	633	638	Right-handed alpha
Helix 61	AG7	A	640	648	Right-handed alpha
Helix 62	AG8	A	648	653	Right-handed alpha
Helix 63	AG9	A	653	658	Right-handed alpha
Helix 64	AH1	A	664	687	Right-handed alpha
Helix 65	AH2	A	689	706	Right-handed alpha
Helix 66	AH3	A	718	750	Right-handed alpha
Helix 67	AH4	B	18	27	Right-handed alpha
Helix 68	AH5	B	30	34	Right-handed 310
Helix 69	AH6	B	38	72	Right-handed alpha
Helix 70	AH7	B	73	80	Right-handed alpha
Helix 71	AH8	B	97	104	Right-handed alpha
Helix 72	AH9	B	119	127	Right-handed alpha
Helix 73	AI1	B	131	157	Right-handed alpha
Helix 74	AI2	B	158	162	Right-handed 310
Helix 75	AI3	B	164	169	Right-handed alpha
Helix 76	AI4	B	170	181	Right-handed alpha
Helix 77	AI5	B	183	197	Right-handed alpha
Helix 78	AI6	B	197	203	Right-handed alpha
Helix 79	AI7	B	222	228	Right-handed alpha
Helix 80	AI8	B	229	235	Right-handed 310
Helix 81	AI9	B	269	288	Right-handed alpha
Helix 82	AJ1	B	300	307	Right-handed alpha
Helix 83	AJ2	B	321	329	Right-handed alpha
Helix 84	AJ3	B	329	352	Right-handed alpha
Helix 85	AJ4	B	365	397	Right-handed alpha
Helix 86	AJ5	B	406	414	Right-handed alpha
Helix 87	AJ6	B	414	446	Right-handed alpha
Helix 88	AJ7	B	448	452	Right-handed 310
Helix 89	AJ8	B	457	468	Right-handed alpha
Helix 90	AJ9	B	483	489	Right-handed alpha
Helix 91	AK1	B	493	502	Right-handed alpha
Helix 92	AK2	B	513	540	Right-handed alpha
Helix 93	AK3	B	549	554	Right-handed 310
Helix 94	AK4	B	562	566	Right-handed 310
Helix 95	AK5	B	571	604	Right-handed alpha
Helix 96	AK6	B	606	613	Right-handed alpha
Helix 97	AK7	B	615	623	Right-handed alpha
Helix 98	AK8	B	623	628	Right-handed alpha
Helix 99	AK9	B	643	666	Right-handed alpha
Helix 100	AL1	B	670	685	Right-handed alpha
Helix 101	AL2	B	701	733	Right-handed alpha
Helix 102	AL3	C	16	21	Right-handed alpha
Helix 103	AL4	C	44	48	Right-handed 310
Helix 104	AL5	C	54	58	Right-handed 310
Helix 105	AL6	D	126	141	Right-handed alpha
Helix 106	AL7	D	183	187	Right-handed 310
Helix 107	AL8	D	189	194	Right-handed 310
Helix 108	AL9	F	89	108	Right-handed alpha
Helix 109	AM1	F	114	138	Right-handed alpha
Helix 110	AM2	F	154	158	Right-handed 310
Helix 111	AM3	F	161	187	Right-handed alpha
Helix 112	AM4	F	200	209	Right-handed alpha
Helix 113	AM5	F	213	224	Right-handed alpha
Helix 114	AM6	G	71	90	Right-handed alpha
Helix 115	AM7	G	91	102	Right-handed alpha
Helix 116	AM8	G	112	116	Right-handed alpha
Helix 117	AM9	G	117	121	Right-handed 310
Helix 118	AN1	G	136	160	Right-handed alpha
Helix 119	AN2	H	66	71	Right-handed alpha
Helix 120	AN3	H	86	97	Right-handed alpha
Helix 121	AN4	H	98	101	Right-handed 310
Helix 122	AN5	H	102	124	Right-handed alpha
Helix 123	AN6	H	143	148	Right-handed alpha
Helix 124	AN7	I	5	32	Right-handed alpha
Helix 125	AN8	J	3	8	Right-handed alpha
Helix 126	AN9	J	10	33	Right-handed alpha
Helix 127	AO1	K	50	69	Right-handed alpha
Helix 128	AO2	K	101	124	Right-handed alpha
Helix 129	AO3	L	77	86	Right-handed alpha
Helix 130	AO4	L	87	91	Right-handed 310
Helix 131	AO5	L	95	111	Right-handed alpha
Helix 132	AO6	L	111	119	Right-handed alpha
Helix 133	AO7	L	126	134	Right-handed alpha
Helix 134	AO8	L	136	154	Right-handed alpha
Helix 135	AO9	L	179	206	Right-handed alpha

There are 12 sheets in PDB entry 9S1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	129	130	first strand
Strand 2	1	133	134	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	133	134	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	124	first strand
Strand 2	D	92	99	anti-parallel
Strand 3	D	145	150	anti-parallel
Strand 4	D	156	158	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	112	115	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	116	119	anti-parallel
Strand 3	E	100	106	anti-parallel
Strand 4	E	86	89	anti-parallel
Strand 5	E	138	140	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	85	first strand
Strand 2	F	140	141	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	107	first strand
Strand 2	G	110	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S1L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S1L