Analysis of interatomic Contacts of Structural Units in PDB entry:
9S1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S1M entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 23 chains in PDB entry 9S1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLU 49	PRO 246
2	GLU 56	ALA 258
3	LEU 48	LEU 260
4	LYS 55	SER 252
5	GLU 49	ARG 242
6	LYS 55	SER 252
A	ALA 27	GLY 750
B	ALA 2	GLY 734
C	SER 2	TYR 81
D	THR 63	ASP 202
E	ILE 79	VAL 141
F	ASP 79	ASP 233
G	LEU 70	PHE 167
H	TYR 55	LYS 148
I	ASP 3	LYS 34
J	ARG 2	PHE 41
K	PHE 47	ILE 126
L	THR 53	ILE 214
O	PHE 50	PHE 138
X	SER 46	GLY 263
Y	ARG 37	ARG 38
Y	VAL 40	GLY 263
Z	SER 46	GLY 263

There are183 helices in PDB entry 9S1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	78	109	Right-handed alpha
Helix 2	AA2	1	115	117	Right-handed 310
Helix 3	AA3	1	118	123	Right-handed alpha
Helix 4	AA4	1	139	160	Right-handed alpha
Helix 5	AA5	1	163	169	Right-handed alpha
Helix 6	AA6	1	171	175	Right-handed 310
Helix 7	AA7	1	182	214	Right-handed alpha
Helix 8	AA8	1	218	229	Right-handed alpha
Helix 9	AA9	1	235	240	Right-handed alpha
Helix 10	AB1	2	88	123	Right-handed alpha
Helix 11	AB2	2	131	136	Right-handed 310
Helix 12	AB3	2	141	166	Right-handed alpha
Helix 13	AB4	2	190	195	Right-handed alpha
Helix 14	AB5	2	203	236	Right-handed alpha
Helix 15	AB6	2	238	249	Right-handed alpha
Helix 16	AB7	3	54	59	Right-handed alpha
Helix 17	AB8	3	85	107	Right-handed alpha
Helix 18	AB9	3	108	117	Right-handed alpha
Helix 19	AC1	3	120	124	Right-handed 310
Helix 20	AC2	3	126	130	Right-handed 310
Helix 21	AC3	3	144	169	Right-handed alpha
Helix 22	AC4	3	170	175	Right-handed 310
Helix 23	AC5	3	180	184	Right-handed 310
Helix 24	AC6	3	207	240	Right-handed alpha
Helix 25	AC7	3	242	253	Right-handed alpha
Helix 26	AC8	4	86	121	Right-handed alpha
Helix 27	AC9	4	139	164	Right-handed alpha
Helix 28	AD1	4	165	168	Right-handed 310
Helix 29	AD2	4	188	192	Right-handed 310
Helix 30	AD3	4	199	228	Right-handed alpha
Helix 31	AD4	4	230	241	Right-handed alpha
Helix 32	AD5	4	242	245	Right-handed 310
Helix 33	AD6	4	246	251	Right-handed alpha
Helix 34	AD7	5	78	109	Right-handed alpha
Helix 35	AD8	5	113	118	Right-handed alpha
Helix 36	AD9	5	118	123	Right-handed alpha
Helix 37	AE1	5	139	160	Right-handed alpha
Helix 38	AE2	5	163	169	Right-handed alpha
Helix 39	AE3	5	171	175	Right-handed 310
Helix 40	AE4	5	185	214	Right-handed alpha
Helix 41	AE5	5	218	229	Right-handed alpha
Helix 42	AE6	5	235	240	Right-handed alpha
Helix 43	AE7	6	86	121	Right-handed alpha
Helix 44	AE8	6	127	131	Right-handed 310
Helix 45	AE9	6	139	164	Right-handed alpha
Helix 46	AF1	6	188	192	Right-handed 310
Helix 47	AF2	6	199	227	Right-handed alpha
Helix 48	AF3	6	230	241	Right-handed alpha
Helix 49	AF4	6	242	245	Right-handed 310
Helix 50	AF5	A	43	52	Right-handed alpha
Helix 51	AF6	A	55	60	Right-handed alpha
Helix 52	AF7	A	62	95	Right-handed alpha
Helix 53	AF8	A	97	104	Right-handed alpha
Helix 54	AF9	A	120	125	Right-handed 310
Helix 55	AG1	A	140	149	Right-handed alpha
Helix 56	AG2	A	153	180	Right-handed alpha
Helix 57	AG3	A	184	190	Right-handed alpha
Helix 58	AG4	A	191	201	Right-handed alpha
Helix 59	AG5	A	203	217	Right-handed alpha
Helix 60	AG6	A	217	228	Right-handed alpha
Helix 61	AG7	A	236	243	Right-handed alpha
Helix 62	AG8	A	243	251	Right-handed alpha
Helix 63	AG9	A	252	256	Right-handed 310
Helix 64	AH1	A	258	263	Right-handed alpha
Helix 65	AH2	A	266	272	Right-handed 310
Helix 66	AH3	A	287	306	Right-handed alpha
Helix 67	AH4	A	318	325	Right-handed alpha
Helix 68	AH5	A	337	343	Right-handed alpha
Helix 69	AH6	A	345	371	Right-handed alpha
Helix 70	AH7	A	380	413	Right-handed alpha
Helix 71	AH8	A	421	429	Right-handed alpha
Helix 72	AH9	A	430	463	Right-handed alpha
Helix 73	AI1	A	464	468	Right-handed 310
Helix 74	AI2	A	478	490	Right-handed alpha
Helix 75	AI3	A	490	495	Right-handed alpha
Helix 76	AI4	A	527	554	Right-handed alpha
Helix 77	AI5	A	563	568	Right-handed alpha
Helix 78	AI6	A	586	616	Right-handed alpha
Helix 79	AI7	A	633	638	Right-handed alpha
Helix 80	AI8	A	640	648	Right-handed alpha
Helix 81	AI9	A	648	653	Right-handed alpha
Helix 82	AJ1	A	653	658	Right-handed alpha
Helix 83	AJ2	A	664	681	Right-handed alpha
Helix 84	AJ3	A	681	687	Right-handed alpha
Helix 85	AJ4	A	689	706	Right-handed alpha
Helix 86	AJ5	A	718	750	Right-handed alpha
Helix 87	AJ6	B	10	14	Right-handed 310
Helix 88	AJ7	B	18	27	Right-handed alpha
Helix 89	AJ8	B	38	72	Right-handed alpha
Helix 90	AJ9	B	74	80	Right-handed alpha
Helix 91	AK1	B	97	104	Right-handed alpha
Helix 92	AK2	B	120	128	Right-handed alpha
Helix 93	AK3	B	131	157	Right-handed alpha
Helix 94	AK4	B	164	169	Right-handed alpha
Helix 95	AK5	B	170	181	Right-handed alpha
Helix 96	AK6	B	184	197	Right-handed alpha
Helix 97	AK7	B	197	204	Right-handed alpha
Helix 98	AK8	B	223	228	Right-handed alpha
Helix 99	AK9	B	229	235	Right-handed 310
Helix 100	AL1	B	269	288	Right-handed alpha
Helix 101	AL2	B	300	308	Right-handed alpha
Helix 102	AL3	B	321	329	Right-handed alpha
Helix 103	AL4	B	330	352	Right-handed alpha
Helix 104	AL5	B	365	397	Right-handed alpha
Helix 105	AL6	B	406	414	Right-handed alpha
Helix 106	AL7	B	414	446	Right-handed alpha
Helix 107	AL8	B	457	468	Right-handed alpha
Helix 108	AL9	B	483	489	Right-handed alpha
Helix 109	AM1	B	493	503	Right-handed alpha
Helix 110	AM2	B	513	540	Right-handed alpha
Helix 111	AM3	B	549	554	Right-handed 310
Helix 112	AM4	B	562	566	Right-handed 310
Helix 113	AM5	B	571	604	Right-handed alpha
Helix 114	AM6	B	606	612	Right-handed alpha
Helix 115	AM7	B	615	623	Right-handed alpha
Helix 116	AM8	B	623	628	Right-handed alpha
Helix 117	AM9	B	630	633	Right-handed 310
Helix 118	AN1	B	643	660	Right-handed alpha
Helix 119	AN2	B	660	666	Right-handed alpha
Helix 120	AN3	B	669	684	Right-handed alpha
Helix 121	AN4	B	701	731	Right-handed alpha
Helix 122	AN5	C	17	21	Right-handed 310
Helix 123	AN6	C	44	48	Right-handed 310
Helix 124	AN7	D	126	141	Right-handed alpha
Helix 125	AN8	D	183	187	Right-handed 310
Helix 126	AN9	F	85	88	Right-handed 310
Helix 127	AO1	F	89	108	Right-handed alpha
Helix 128	AO2	F	114	138	Right-handed alpha
Helix 129	AO3	F	154	158	Right-handed 310
Helix 130	AO4	F	161	187	Right-handed alpha
Helix 131	AO5	F	193	197	Right-handed 310
Helix 132	AO6	F	200	209	Right-handed alpha
Helix 133	AO7	F	213	225	Right-handed alpha
Helix 134	AO8	G	71	90	Right-handed alpha
Helix 135	AO9	G	91	102	Right-handed alpha
Helix 136	AP1	G	112	116	Right-handed alpha
Helix 137	AP2	G	117	121	Right-handed 310
Helix 138	AP3	G	124	128	Right-handed 310
Helix 139	AP4	G	136	160	Right-handed alpha
Helix 140	AP5	H	86	96	Right-handed alpha
Helix 141	AP6	H	98	102	Right-handed 310
Helix 142	AP7	H	103	124	Right-handed alpha
Helix 143	AP8	H	143	148	Right-handed alpha
Helix 144	AP9	I	5	32	Right-handed alpha
Helix 145	AQ1	J	3	8	Right-handed alpha
Helix 146	AQ2	J	10	33	Right-handed alpha
Helix 147	AQ3	K	50	69	Right-handed alpha
Helix 148	AQ4	K	101	121	Right-handed alpha
Helix 149	AQ5	L	62	64	Right-handed 310
Helix 150	AQ6	L	77	85	Right-handed alpha
Helix 151	AQ7	L	95	118	Right-handed alpha
Helix 152	AQ8	L	126	134	Right-handed alpha
Helix 153	AQ9	L	136	154	Right-handed alpha
Helix 154	AR1	L	179	206	Right-handed alpha
Helix 155	AR2	O	59	71	Right-handed alpha
Helix 156	AR3	O	72	75	Right-handed 310
Helix 157	AR4	O	82	95	Right-handed alpha
Helix 158	AR5	O	107	135	Right-handed alpha
Helix 159	AR6	X	57	61	Right-handed 310
Helix 160	AR7	X	82	85	Right-handed 310
Helix 161	AR8	X	86	121	Right-handed alpha
Helix 162	AR9	X	130	138	Right-handed alpha
Helix 163	AS1	X	156	176	Right-handed alpha
Helix 164	AS2	X	190	194	Right-handed 310
Helix 165	AS3	X	201	234	Right-handed alpha
Helix 166	AS4	X	236	247	Right-handed alpha
Helix 167	AS5	X	252	261	Right-handed alpha
Helix 168	AS6	Y	57	61	Right-handed 310
Helix 169	AS7	Y	86	121	Right-handed alpha
Helix 170	AS8	Y	131	135	Right-handed 310
Helix 171	AS9	Y	158	176	Right-handed alpha
Helix 172	AT1	Y	201	233	Right-handed alpha
Helix 173	AT2	Y	236	247	Right-handed alpha
Helix 174	AT3	Y	252	261	Right-handed alpha
Helix 175	AT4	Z	49	53	Right-handed 310
Helix 176	AT5	Z	57	61	Right-handed 310
Helix 177	AT6	Z	86	120	Right-handed alpha
Helix 178	AT7	Z	128	138	Right-handed 310
Helix 179	AT8	Z	156	177	Right-handed alpha
Helix 180	AT9	Z	190	194	Right-handed 310
Helix 181	AU1	Z	201	234	Right-handed alpha
Helix 182	AU2	Z	236	247	Right-handed alpha
Helix 183	AU3	Z	252	261	Right-handed alpha

There are 14 sheets in PDB entry 9S1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	129	130	first strand
Strand 2	1	133	134	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	129	130	first strand
Strand 2	5	133	134	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	133	134	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	124	first strand
Strand 2	D	92	99	anti-parallel
Strand 3	D	145	150	anti-parallel
Strand 4	D	156	158	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	112	115	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	133	first strand
Strand 2	E	116	119	anti-parallel
Strand 3	E	100	106	anti-parallel
Strand 4	E	86	89	anti-parallel
Strand 5	E	138	140	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	106	107	first strand
Strand 2	G	110	111	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	60	first strand
Strand 2	L	70	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S1M