Analysis of interatomic Contacts of Structural Units in PDB entry:
9S1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S1P entry

There is 1 chain in PDB entry 9S1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 MET 1SER 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9S1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
1 8Right-handed alpha
Helix 2
AA2
H
13 18Right-handed alpha
Helix 3
AA3
H
42 47Right-handed 310
Helix 4
AA4
H
54 67Right-handed alpha
Helix 5
AA5
H
78 92Right-handed alpha
Helix 6
AA6
H
93 97Right-handed 310
Helix 7
AA7
H
108 125Right-handed alpha
Helix 8
AA8
H
140 145Right-handed alpha
Helix 9
AA9
H
149 155Right-handed alpha
Helix 10
AB1
H
177 188Right-handed alpha
Helix 11
AB2
H
214 229Right-handed alpha
Helix 12
AB3
H
250 254Right-handed 310
Helix 13
AB4
H
263 268Right-handed 310
Helix 14
AB5
H
280 283Right-handed 310
Helix 15
AB6
H
297 312Right-handed alpha
Helix 16
AB7
H
315 339Right-handed alpha
Helix 17
AB8
H
358 360Right-handed 310
Helix 18
AB9
H
361 372Right-handed alpha
Helix 19
AC1
H
395 419Right-handed alpha
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There are 3 sheets in PDB entry 9S1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 26first strand
Strand 2
H
29 32anti-parallel
Strand 3
H
37 40anti-parallel
Strand 4
H
374 375parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
101 104first strand
Strand 2
H
275 278anti-parallel
Strand 3
H
259 262anti-parallel
Strand 4
H
231 235parallel
Strand 5
H
198 201parallel
Strand 6
H
129 132parallel
Strand 7
H
163 166parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
343 348first strand
Strand 2
H
351 356anti-parallel
Strand 3
H
385 388anti-parallel
Strand 4
H
377 379anti-parallel
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