Analysis of interatomic Contacts of Structural Units in PDB entry:
9S2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S2D entry

There are 2 chains in PDB entry 9S2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 411PRO 594
B
 THR 411LYS 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9S2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
412 418Right-handed alpha
Helix 2
AA2
A
444 452Right-handed alpha
Helix 3
AA3
A
459 473Right-handed alpha
Helix 4
AA4
A
484 487Right-handed 310
Helix 5
AA5
A
495 504Right-handed alpha
Helix 6
AA6
A
525 535Right-handed alpha
Helix 7
AA7
A
552 562Right-handed alpha
Helix 8
AA8
A
586 591Right-handed alpha
Helix 9
AA9
B
412 418Right-handed alpha
Helix 10
AB1
B
419 422Right-handed 310
Helix 11
AB2
B
444 452Right-handed alpha
Helix 12
AB3
B
459 473Right-handed alpha
Helix 13
AB4
B
484 487Right-handed 310
Helix 14
AB5
B
495 504Right-handed alpha
Helix 15
AB6
B
524 536Right-handed alpha
Helix 16
AB7
B
547 551Right-handed 310
Helix 17
AB8
B
552 562Right-handed alpha
Helix 18
AB9
B
586 591Right-handed alpha
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There are 6 sheets in PDB entry 9S2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 510first strand
Strand 2
A
477 482parallel
Strand 3
A
440 443parallel
Strand 4
A
538 540parallel
Strand 5
A
563 564parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 458first strand
Strand 2
A
492 493parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
573 574anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 510first strand
Strand 2
B
477 482parallel
Strand 3
B
440 443parallel
Strand 4
B
538 540parallel
Strand 5
B
563 564parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
492 493parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 568first strand
Strand 2
B
573 574anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il