Analysis of interatomic Contacts of Structural Units in PDB entry:
9S2H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S2H entry

There is 1 chain in PDB entry 9S2H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 25LYS 1491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 9S2H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 49Right-handed alpha
Helix 2
AA2
A
89 102Right-handed alpha
Helix 3
AA3
A
137 145Right-handed alpha
Helix 4
AA4
A
189 196Right-handed alpha
Helix 5
AA5
A
219 224Right-handed alpha
Helix 6
AA6
A
242 255Right-handed alpha
Helix 7
AA7
A
266 280Right-handed alpha
Helix 8
AA8
A
299 315Right-handed alpha
Helix 9
AA9
A
331 348Right-handed alpha
Helix 10
AB1
A
362 366Right-handed 310
Helix 11
AB2
A
386 394Right-handed alpha
Helix 12
AB3
A
402 410Right-handed alpha
Helix 13
AB4
A
419 425Right-handed alpha
Helix 14
AB5
A
432 442Right-handed alpha
Helix 15
AB6
A
443 457Right-handed alpha
Helix 16
AB7
A
489 508Right-handed alpha
Helix 17
AB8
A
511 528Right-handed alpha
Helix 18
AB9
A
529 531Right-handed 310
Helix 19
AC1
A
542 559Right-handed alpha
Helix 20
AC2
A
562 570Right-handed alpha
Helix 21
AC3
A
570 580Right-handed alpha
Helix 22
AC4
A
584 615Right-handed alpha
Helix 23
AC5
A
620 649Right-handed alpha
Helix 24
AC6
A
655 669Right-handed alpha
Helix 25
AC7
A
675 679Right-handed 310
Helix 26
AC8
A
680 684Right-handed 310
Helix 27
AC9
A
685 690Right-handed alpha
Helix 28
AD1
A
690 705Right-handed alpha
Helix 29
AD2
A
725 729Right-handed 310
Helix 30
AD3
A
744 752Right-handed alpha
Helix 31
AD4
A
756 760Right-handed 310
Helix 32
AD5
A
761 766Right-handed alpha
Helix 33
AD6
A
768 784Right-handed alpha
Helix 34
AD7
A
898 907Right-handed alpha
Helix 35
AD8
A
948 961Right-handed alpha
Helix 36
AD9
A
966 981Right-handed alpha
Helix 37
AE1
A
982 987Right-handed 310
Helix 38
AE2
A
999 1013Right-handed alpha
Helix 39
AE3
A
1030 1046Right-handed alpha
Helix 40
AE4
A
1062 1066Right-handed 310
Helix 41
AE5
A
1085 1087Right-handed 310
Helix 42
AE6
A
1088 1099Right-handed alpha
Helix 43
AE7
A
1108 1117Right-handed alpha
Helix 44
AE8
A
1128 1135Right-handed alpha
Helix 45
AE9
A
1136 1151Right-handed alpha
Helix 46
AF1
A
1171 1189Right-handed alpha
Helix 47
AF2
A
1190 1212Right-handed alpha
Helix 48
AF3
A
1218 1232Right-handed alpha
Helix 49
AF4
A
1235 1257Right-handed alpha
Helix 50
AF5
A
1265 1273Right-handed alpha
Helix 51
AF6
A
1276 1294Right-handed alpha
Helix 52
AF7
A
1297 1305Right-handed alpha
Helix 53
AF8
A
1307 1336Right-handed alpha
Helix 54
AF9
A
1339 1357Right-handed alpha
Helix 55
AG1
A
1368 1370Right-handed 310
Helix 56
AG2
A
1371 1378Right-handed alpha
Helix 57
AG3
A
1378 1391Right-handed alpha
Helix 58
AG4
A
1414 1419Right-handed alpha
Helix 59
AG5
A
1419 1427Right-handed alpha
Helix 60
AG6
A
1447 1455Right-handed alpha
Helix 61
AG7
A
1459 1461Right-handed 310
Helix 62
AG8
A
1462 1486Right-handed alpha
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There are 8 sheets in PDB entry 9S2H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
170 171anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
203 204anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 182first strand
Strand 2
A
368 373parallel
Strand 3
A
376 382anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
318 321parallel
Strand 3
A
350 351parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
872 874first strand
Strand 2
A
857 867anti-parallel
Strand 3
A
914 916anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
879 883first strand
Strand 2
A
857 867anti-parallel
Strand 3
A
920 921anti-parallel
Strand 4
A
924 925anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1019 1022first strand
Strand 2
A
1050 1053parallel
Strand 3
A
888 892parallel
Strand 4
A
1068 1071parallel
Strand 5
A
1080 1083anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1430 1431first strand
Strand 2
A
1442 1443anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il