Analysis of interatomic Contacts of Structural Units in PDB entry:
9S35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S35 entry

There are 2 chains in PDB entry 9S35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 0SER 121
A
 LEU 48GLU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9S35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
60 63Right-handed 310
Helix 2
AA2
B
85 89Right-handed 310
Helix 3
AA3
A
55 76Right-handed alpha
Helix 4
AA4
A
85 107Right-handed alpha
Helix 5
AA5
A
116 141Right-handed alpha
Helix 6
AA6
A
145 154Right-handed alpha
Helix 7
AA7
A
156 169Right-handed alpha
Helix 8
AA8
A
173 192Right-handed alpha
Helix 9
AA9
A
204 232Right-handed alpha
Helix 10
AB1
A
238 249Right-handed alpha
Helix 11
AB2
A
249 262Right-handed alpha
Helix 12
AB3
A
265 273Right-handed alpha
Helix 13
AB4
A
278 291Right-handed alpha
Helix 14
AB5
A
292 306Right-handed alpha
Helix 15
AB6
A
307 318Right-handed alpha
Helix 16
AB7
A
319 330Right-handed alpha
Helix 17
AB8
A
335 361Right-handed alpha
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There are 3 sheets in PDB entry 9S35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 6first strand
Strand 2
B
15 25anti-parallel
Strand 3
B
76 84anti-parallel
Strand 4
B
66 71anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
116 120parallel
Strand 3
B
90 102anti-parallel
Strand 4
B
30 38anti-parallel
Strand 5
B
44 51anti-parallel
Strand 6
B
57 58anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
116 120parallel
Strand 3
B
90 102anti-parallel
Strand 4
B
105 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il