Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S3E entry

There are 19 chains in PDB entry 9S3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ALA 344
B	GLY 2	ILE 482
C	GLY 25	ASN 473
D	ASP 14	LEU 353
E	ARG 8	SER 82
F	PHE 10	ARG 39
H	GLY 13	MET 72
I	MET 1	GLY 33
J	GLY 6	LEU 40
K	LYS 25	ARG 61
L	SER 4	ASN 38
M	ASN 4	SER 31
O	GLU 1	SER 248
P	ALA 1	ALA 186
Q	GLU 1	ALA 148
T	MET 1	PRO 30
W	LEU 1	ASP 47
X	ALA 45	PRO 80
U	GLU 72	ASN 99

There are118 helices in PDB entry 9S3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	30	55	Right-handed alpha
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	101	108	Right-handed alpha
Helix 6	AA6	A	109	137	Right-handed alpha
Helix 7	AA7	A	142	159	Right-handed alpha
Helix 8	AA8	A	159	166	Right-handed alpha
Helix 9	AA9	A	167	171	Right-handed 310
Helix 10	AB1	A	176	191	Right-handed alpha
Helix 11	AB2	A	192	194	Right-handed 310
Helix 12	AB3	A	195	221	Right-handed alpha
Helix 13	AB4	A	233	237	Right-handed 310
Helix 14	AB5	A	247	259	Right-handed alpha
Helix 15	AB6	A	267	294	Right-handed alpha
Helix 16	AB7	A	316	332	Right-handed alpha
Helix 17	AB8	B	6	13	Right-handed 310
Helix 18	AB9	B	15	45	Right-handed alpha
Helix 19	AC1	B	54	59	Right-handed 310
Helix 20	AC2	B	62	69	Right-handed alpha
Helix 21	AC3	B	92	117	Right-handed alpha
Helix 22	AC4	B	134	156	Right-handed alpha
Helix 23	AC5	B	186	191	Right-handed 310
Helix 24	AC6	B	195	219	Right-handed alpha
Helix 25	AC7	B	222	229	Right-handed alpha
Helix 26	AC8	B	233	259	Right-handed alpha
Helix 27	AC9	B	264	269	Right-handed alpha
Helix 28	AD1	B	271	277	Right-handed alpha
Helix 29	AD2	B	278	293	Right-handed alpha
Helix 30	AD3	B	297	304	Right-handed alpha
Helix 31	AD4	B	306	313	Right-handed alpha
Helix 32	AD5	B	314	322	Right-handed 310
Helix 33	AD6	B	329	333	Right-handed 310
Helix 34	AD7	B	391	396	Right-handed alpha
Helix 35	AD8	B	413	426	Right-handed alpha
Helix 36	AD9	B	446	475	Right-handed alpha
Helix 37	AE1	B	476	479	Right-handed 310
Helix 38	AE2	C	34	43	Right-handed 310
Helix 39	AE3	C	45	75	Right-handed alpha
Helix 40	AE4	C	80	84	Right-handed 310
Helix 41	AE5	C	87	95	Right-handed alpha
Helix 42	AE6	C	100	104	Right-handed 310
Helix 43	AE7	C	108	135	Right-handed alpha
Helix 44	AE8	C	153	181	Right-handed alpha
Helix 45	AE9	C	205	214	Right-handed alpha
Helix 46	AF1	C	229	254	Right-handed alpha
Helix 47	AF2	C	257	264	Right-handed alpha
Helix 48	AF3	C	267	293	Right-handed alpha
Helix 49	AF4	C	298	303	Right-handed alpha
Helix 50	AF5	C	305	324	Right-handed alpha
Helix 51	AF6	C	327	331	Right-handed 310
Helix 52	AF7	C	353	359	Right-handed 310
Helix 53	AF8	C	366	368	Right-handed 310
Helix 54	AF9	C	376	383	Right-handed alpha
Helix 55	AG1	C	385	398	Right-handed alpha
Helix 56	AG2	C	421	454	Right-handed alpha
Helix 57	AG3	C	460	469	Right-handed 310
Helix 58	AG4	D	15	24	Right-handed alpha
Helix 59	AG5	D	31	56	Right-handed alpha
Helix 60	AG6	D	83	87	Right-handed 310
Helix 61	AG7	D	101	109	Right-handed alpha
Helix 62	AG8	D	109	137	Right-handed alpha
Helix 63	AG9	D	141	147	Right-handed alpha
Helix 64	AH1	D	147	159	Right-handed alpha
Helix 65	AH2	D	159	165	Right-handed alpha
Helix 66	AH3	D	167	171	Right-handed 310
Helix 67	AH4	D	176	191	Right-handed alpha
Helix 68	AH5	D	192	194	Right-handed 310
Helix 69	AH6	D	195	222	Right-handed alpha
Helix 70	AH7	D	231	236	Right-handed 310
Helix 71	AH8	D	246	258	Right-handed alpha
Helix 72	AH9	D	264	292	Right-handed alpha
Helix 73	AI1	D	299	309	Right-handed alpha
Helix 74	AI2	D	314	335	Right-handed alpha
Helix 75	AI3	D	336	339	Right-handed 310
Helix 76	AI4	D	343	347	Right-handed 310
Helix 77	AI5	E	9	15	Right-handed alpha
Helix 78	AI6	E	16	40	Right-handed alpha
Helix 79	AI7	E	41	48	Right-handed alpha
Helix 80	AI8	E	71	82	Right-handed alpha
Helix 81	AI9	F	11	35	Right-handed alpha
Helix 82	AJ1	H	17	24	Right-handed alpha
Helix 83	AJ2	H	25	28	Right-handed 310
Helix 84	AJ3	H	39	62	Right-handed alpha
Helix 85	AJ4	I	2	25	Right-handed alpha
Helix 86	AJ5	J	9	33	Right-handed alpha
Helix 87	AJ6	K	27	32	Right-handed 310
Helix 88	AJ7	K	33	40	Right-handed alpha
Helix 89	AJ8	K	42	58	Right-handed alpha
Helix 90	AJ9	L	14	38	Right-handed alpha
Helix 91	AK1	M	5	31	Right-handed alpha
Helix 92	AK2	O	8	15	Right-handed alpha
Helix 93	AK3	O	16	21	Right-handed alpha
Helix 94	AK4	O	24	28	Right-handed 310
Helix 95	AK5	O	175	184	Right-handed 310
Helix 96	AK6	O	185	190	Right-handed alpha
Helix 97	AK7	P	70	75	Right-handed 310
Helix 98	AK8	P	76	84	Right-handed alpha
Helix 99	AK9	P	85	88	Right-handed 310
Helix 100	AL1	P	138	141	Right-handed 310
Helix 101	AL2	P	165	169	Right-handed alpha
Helix 102	AL3	P	171	183	Right-handed alpha
Helix 103	AL4	Q	20	28	Right-handed alpha
Helix 104	AL5	Q	43	61	Right-handed alpha
Helix 105	AL6	Q	61	68	Right-handed alpha
Helix 106	AL7	Q	69	76	Right-handed alpha
Helix 107	AL8	Q	77	78	Right-handed 310
Helix 108	AL9	Q	79	82	Right-handed 310
Helix 109	AM1	Q	83	95	Right-handed alpha
Helix 110	AM2	Q	96	123	Right-handed alpha
Helix 111	AM3	Q	125	148	Right-handed alpha
Helix 112	AM4	T	2	23	Right-handed alpha
Helix 113	AM5	W	13	17	Right-handed 310
Helix 114	AM6	W	19	43	Right-handed alpha
Helix 115	AM7	X	48	79	Right-handed alpha
Helix 116	AM8	U	77	84	Right-handed alpha
Helix 117	AM9	U	84	91	Right-handed alpha
Helix 118	AN1	U	94	98	Right-handed 310

There are 18 sheets in PDB entry 9S3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	174	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	C	402	403	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	L	11	12	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	78	79	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	177	179	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	430	433	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	380	first strand
Strand 2	B	369	371	anti-parallel
Strand 3	B	353	356	anti-parallel
Strand 4	B	343	347	anti-parallel
Strand 5	B	398	402	anti-parallel
Strand 6	B	410	411	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	187	first strand
Strand 2	C	195	197	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	349	351	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	374	375	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	174	175	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	73	75	first strand
Strand 2	O	44	61	anti-parallel
Strand 3	O	86	95	anti-parallel
Strand 4	O	107	109	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	73	75	first strand
Strand 2	O	44	61	anti-parallel
Strand 3	O	235	247	anti-parallel
Strand 4	O	213	222	anti-parallel
Strand 5	O	196	207	anti-parallel
Strand 6	O	141	148	anti-parallel
Strand 7	O	134	138	anti-parallel
Strand 8	O	101	104	anti-parallel
Strand 9	O	86	95	anti-parallel
Strand 10	O	107	109	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	77	78	first strand
Strand 2	O	111	117	anti-parallel
Strand 3	O	123	129	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	22	first strand
Strand 2	P	27	31	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	34	36	first strand
Strand 2	P	45	51	anti-parallel
Strand 3	P	58	65	anti-parallel
Strand 4	P	155	164	anti-parallel
Strand 5	P	143	152	anti-parallel
Strand 6	P	127	135	anti-parallel
Strand 7	P	109	117	anti-parallel
Strand 8	Q	7	8	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	90	91	first strand
Strand 2	Q	3	4	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	120	121	first strand
Strand 2	P	124	125	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3E