Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S3H entry

There is 1 chain in PDB entry 9S3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22GLY 521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9S3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
71 77Right-handed alpha
Helix 3
AA3
A
78 97Right-handed alpha
Helix 4
AA4
A
97 102Right-handed alpha
Helix 5
AA5
A
111 136Right-handed alpha
Helix 6
AA6
A
186 191Right-handed alpha
Helix 7
AA7
A
193 198Right-handed alpha
Helix 8
AA8
A
213 226Right-handed alpha
Helix 9
AA9
A
243 258Right-handed alpha
Helix 10
AB1
A
336 339Right-handed 310
Helix 11
AB2
A
345 360Right-handed alpha
Helix 12
AB3
A
389 398Right-handed alpha
Helix 13
AB4
A
399 402Right-handed 310
Helix 14
AB5
A
411 418Right-handed alpha
Helix 15
AB6
A
422 426Right-handed 310
Helix 16
AB7
A
446 449Right-handed 310
Helix 17
AB8
A
461 475Right-handed alpha
Helix 18
AB9
A
478 483Right-handed alpha
Helix 19
AC1
A
493 499Right-handed 310
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There are 6 sheets in PDB entry 9S3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
53 56parallel
Strand 3
A
30 33parallel
Strand 4
A
171 172parallel
Strand 5
A
333 334parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
161 166anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
297 300anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
230 234parallel
Strand 3
A
207 210parallel
Strand 4
A
291 294parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 273first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
286 289anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
382 386anti-parallel
Strand 3
A
451 459anti-parallel
Strand 4
A
438 445anti-parallel
Strand 5
A
403 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il