Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S3P entry

There are 7 chains in PDB entry 9S3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ARG 141
B	HIS 2	HIS 146
C	LEU 2	ARG 141
D	HIS 2	HIS 146
E	SER 329	VAL 521
F	SER 329	ILE 655
G	GLU 328	ILE 655

There are 58 helices in PDB entry 9S3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	18	Right-handed alpha
Helix 2	AA2	A	21	36	Right-handed alpha
Helix 3	AA3	A	37	43	Right-handed 310
Helix 4	AA4	A	52	72	Right-handed alpha
Helix 5	AA5	A	75	80	Right-handed alpha
Helix 6	AA6	A	80	90	Right-handed alpha
Helix 7	AA7	A	94	113	Right-handed alpha
Helix 8	AA8	A	118	137	Right-handed alpha
Helix 9	AA9	B	4	17	Right-handed alpha
Helix 10	AB1	B	22	35	Right-handed alpha
Helix 11	AB2	B	36	46	Right-handed 310
Helix 12	AB3	B	50	56	Right-handed alpha
Helix 13	AB4	B	57	77	Right-handed alpha
Helix 14	AB5	B	80	85	Right-handed alpha
Helix 15	AB6	B	86	95	Right-handed alpha
Helix 16	AB7	B	99	119	Right-handed alpha
Helix 17	AB8	B	120	122	Right-handed 310
Helix 18	AB9	B	123	142	Right-handed alpha
Helix 19	AC1	C	3	18	Right-handed alpha
Helix 20	AC2	C	20	36	Right-handed alpha
Helix 21	AC3	C	37	43	Right-handed 310
Helix 22	AC4	C	52	72	Right-handed alpha
Helix 23	AC5	C	75	80	Right-handed alpha
Helix 24	AC6	C	80	89	Right-handed alpha
Helix 25	AC7	C	94	113	Right-handed alpha
Helix 26	AC8	C	118	137	Right-handed alpha
Helix 27	AC9	D	4	16	Right-handed alpha
Helix 28	AD1	D	22	35	Right-handed alpha
Helix 29	AD2	D	36	43	Right-handed 310
Helix 30	AD3	D	50	56	Right-handed alpha
Helix 31	AD4	D	57	77	Right-handed alpha
Helix 32	AD5	D	80	85	Right-handed alpha
Helix 33	AD6	D	85	95	Right-handed alpha
Helix 34	AD7	D	99	119	Right-handed alpha
Helix 35	AD8	D	120	122	Right-handed 310
Helix 36	AD9	D	123	142	Right-handed alpha
Helix 37	AE1	D	143	146	Right-handed 310
Helix 38	AE2	E	330	335	Right-handed alpha
Helix 39	AE3	E	364	370	Right-handed alpha
Helix 40	AE4	E	471	487	Right-handed alpha
Helix 41	AE5	E	489	501	Right-handed alpha
Helix 42	AE6	E	508	521	Right-handed alpha
Helix 43	AE7	F	336	340	Right-handed 310
Helix 44	AE8	F	365	370	Right-handed alpha
Helix 45	AE9	F	392	394	Right-handed 310
Helix 46	AF1	F	465	469	Right-handed 310
Helix 47	AF2	F	471	487	Right-handed alpha
Helix 48	AF3	F	489	501	Right-handed alpha
Helix 49	AF4	F	505	507	Right-handed 310
Helix 50	AF5	F	508	534	Right-handed alpha
Helix 51	AF6	F	590	592	Right-handed 310
Helix 52	AF7	G	329	334	Right-handed alpha
Helix 53	AF8	G	364	370	Right-handed alpha
Helix 54	AF9	G	471	487	Right-handed alpha
Helix 55	AG1	G	489	501	Right-handed alpha
Helix 56	AG2	G	505	529	Right-handed alpha
Helix 57	AG3	G	531	535	Right-handed 310
Helix 58	AG4	G	564	568	Right-handed 310

There are 10 sheets in PDB entry 9S3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	349	352	first strand
Strand 2	E	375	379	anti-parallel
Strand 3	E	384	391	anti-parallel
Strand 4	E	421	427	anti-parallel
Strand 5	E	411	416	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	357	first strand
Strand 2	E	447	458	anti-parallel
Strand 3	E	434	443	anti-parallel
Strand 4	E	398	402	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	349	352	first strand
Strand 2	F	375	378	anti-parallel
Strand 3	F	385	390	anti-parallel
Strand 4	F	422	427	anti-parallel
Strand 5	F	411	415	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	354	357	first strand
Strand 2	F	447	462	anti-parallel
Strand 3	F	432	443	anti-parallel
Strand 4	F	396	402	anti-parallel
Strand 5	F	407	408	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	549	550	first strand
Strand 2	F	569	578	anti-parallel
Strand 3	F	581	588	anti-parallel
Strand 4	F	615	621	anti-parallel
Strand 5	F	605	610	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	552	555	first strand
Strand 2	F	642	652	anti-parallel
Strand 3	F	630	637	anti-parallel
Strand 4	F	594	599	anti-parallel
Strand 5	F	602	603	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	349	352	first strand
Strand 2	G	371	380	anti-parallel
Strand 3	G	383	391	anti-parallel
Strand 4	G	421	427	anti-parallel
Strand 5	G	411	415	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	354	357	first strand
Strand 2	G	447	458	anti-parallel
Strand 3	G	434	443	anti-parallel
Strand 4	G	396	403	anti-parallel
Strand 5	G	406	407	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	549	550	first strand
Strand 2	G	573	578	anti-parallel
Strand 3	G	581	588	anti-parallel
Strand 4	G	615	621	anti-parallel
Strand 5	G	605	610	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	553	556	first strand
Strand 2	G	646	651	anti-parallel
Strand 3	G	628	635	anti-parallel
Strand 4	G	594	599	anti-parallel
Strand 5	G	602	603	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3P