Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S3Z entry

There are 4 chains in PDB entry 9S3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 386	SER 771
B	ILE 391	GLY 775
C	VAL 386	SER 771
D	ILE 391	GLY 775

There are 46 helices in PDB entry 9S3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	407	411	Right-handed 310
Helix 2	AA2	A	412	415	Right-handed 310
Helix 3	AA3	A	419	433	Right-handed alpha
Helix 4	AA4	A	457	465	Right-handed alpha
Helix 5	AA5	A	478	483	Right-handed alpha
Helix 6	AA6	A	631	638	Right-handed alpha
Helix 7	AA7	A	649	658	Right-handed alpha
Helix 8	AA8	A	660	672	Right-handed alpha
Helix 9	AA9	A	681	693	Right-handed alpha
Helix 10	AB1	A	702	710	Right-handed alpha
Helix 11	AB2	A	738	752	Right-handed alpha
Helix 12	AB3	A	753	764	Right-handed alpha
Helix 13	AB4	B	417	420	Right-handed 310
Helix 14	AB5	B	424	438	Right-handed alpha
Helix 15	AB6	B	462	470	Right-handed alpha
Helix 16	AB7	B	483	488	Right-handed alpha
Helix 17	AB8	B	636	643	Right-handed alpha
Helix 18	AB9	B	654	663	Right-handed alpha
Helix 19	AC1	B	665	678	Right-handed alpha
Helix 20	AC2	B	686	697	Right-handed alpha
Helix 21	AC3	B	707	715	Right-handed alpha
Helix 22	AC4	B	743	757	Right-handed alpha
Helix 23	AC5	B	758	769	Right-handed alpha
Helix 24	AC6	C	407	411	Right-handed 310
Helix 25	AC7	C	412	415	Right-handed 310
Helix 26	AC8	C	419	433	Right-handed alpha
Helix 27	AC9	C	457	465	Right-handed alpha
Helix 28	AD1	C	478	483	Right-handed alpha
Helix 29	AD2	C	631	638	Right-handed alpha
Helix 30	AD3	C	649	658	Right-handed alpha
Helix 31	AD4	C	660	672	Right-handed alpha
Helix 32	AD5	C	681	693	Right-handed alpha
Helix 33	AD6	C	702	710	Right-handed alpha
Helix 34	AD7	C	738	752	Right-handed alpha
Helix 35	AD8	C	753	764	Right-handed alpha
Helix 36	AD9	D	417	420	Right-handed 310
Helix 37	AE1	D	424	438	Right-handed alpha
Helix 38	AE2	D	462	470	Right-handed alpha
Helix 39	AE3	D	483	488	Right-handed alpha
Helix 40	AE4	D	636	643	Right-handed alpha
Helix 41	AE5	D	653	663	Right-handed alpha
Helix 42	AE6	D	667	678	Right-handed alpha
Helix 43	AE7	D	686	697	Right-handed alpha
Helix 44	AE8	D	707	715	Right-handed alpha
Helix 45	AE9	D	743	757	Right-handed alpha
Helix 46	AF1	D	758	769	Right-handed alpha

There are 19 sheets in PDB entry 9S3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	395	first strand
Strand 2	A	435	440	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	476	first strand
Strand 2	A	726	733	anti-parallel
Strand 3	A	485	487	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	476	first strand
Strand 2	A	726	733	anti-parallel
Strand 3	A	492	494	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	445	first strand
Strand 2	B	396	400	parallel
Strand 3	B	475	481	parallel
Strand 4	B	731	738	anti-parallel
Strand 5	B	490	491	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	445	first strand
Strand 2	B	396	400	parallel
Strand 3	B	475	481	parallel
Strand 4	B	731	738	anti-parallel
Strand 5	B	497	499	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	409	first strand
Strand 2	B	422	423	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	649	first strand
Strand 2	B	701	706	parallel
Strand 3	B	501	506	anti-parallel
Strand 4	B	721	724	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	390	395	first strand
Strand 2	C	435	440	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	731	733	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	493	494	first strand
Strand 2	C	726	727	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	400	first strand
Strand 2	D	440	445	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	409	first strand
Strand 2	D	422	423	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	491	first strand
Strand 2	D	737	738	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	499	first strand
Strand 2	D	731	733	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	649	first strand
Strand 2	D	701	706	parallel
Strand 3	D	501	506	anti-parallel
Strand 4	D	721	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S3Z