Analysis of interatomic Contacts of Structural Units in PDB entry:
9S41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S41 entry

There are 6 chains in PDB entry 9S41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 504ARG 815
B
 GLN 509ARG 820
C
 GLN 504ARG 815
D
 GLN 509ARG 820
I
 SER 6GLU 206
J
 SER 6GLU 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9S41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
511 515Right-handed 310
Helix 2
AA2
A
518 540Right-handed alpha
Helix 3
AA3
A
568 581Right-handed alpha
Helix 4
AA4
A
591 626Right-handed alpha
Helix 5
AA5
A
784 787Right-handed 310
Helix 6
AA6
A
788 815Right-handed alpha
Helix 7
AA7
B
516 520Right-handed 310
Helix 8
AA8
B
523 548Right-handed alpha
Helix 9
AA9
B
573 586Right-handed alpha
Helix 10
AB1
B
596 627Right-handed alpha
Helix 11
AB2
B
793 820Right-handed alpha
Helix 12
AB3
C
511 515Right-handed 310
Helix 13
AB4
C
518 543Right-handed alpha
Helix 14
AB5
C
568 581Right-handed alpha
Helix 15
AB6
C
591 626Right-handed alpha
Helix 16
AB7
C
784 787Right-handed 310
Helix 17
AB8
C
788 815Right-handed alpha
Helix 18
AB9
D
516 520Right-handed 310
Helix 19
AC1
D
523 548Right-handed alpha
Helix 20
AC2
D
573 586Right-handed alpha
Helix 21
AC3
D
596 627Right-handed alpha
Helix 22
AC4
D
789 792Right-handed 310
Helix 23
AC5
D
793 820Right-handed alpha
Helix 24
AC6
I
7 30Right-handed alpha
Helix 25
AC7
I
87 101Right-handed alpha
Helix 26
AC8
I
101 124Right-handed alpha
Helix 27
AC9
I
129 161Right-handed alpha
Helix 28
AD1
I
176 206Right-handed alpha
Helix 29
AD2
J
7 30Right-handed alpha
Helix 30
AD3
J
87 101Right-handed alpha
Helix 31
AD4
J
101 124Right-handed alpha
Helix 32
AD5
J
129 162Right-handed alpha
Helix 33
AD6
J
176 206Right-handed alpha
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There are 2 sheets in PDB entry 9S41. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
72 74first strand
Strand 2
I
60 65anti-parallel
Strand 3
I
52 56anti-parallel
Strand 4
I
34 39anti-parallel
Strand 5
I
170 175anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
72 74first strand
Strand 2
J
60 65anti-parallel
Strand 3
J
52 56anti-parallel
Strand 4
J
34 39anti-parallel
Strand 5
J
170 175anti-parallel
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