Analysis of interatomic Contacts of Structural Units in PDB entry:
9S4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S4T entry

There is 1 chain in PDB entry 9S4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26PRO 1490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9S4T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 49Right-handed alpha
Helix 2
AA2
A
89 102Right-handed alpha
Helix 3
AA3
A
187 196Right-handed alpha
Helix 4
AA4
A
216 224Right-handed alpha
Helix 5
AA5
A
242 254Right-handed alpha
Helix 6
AA6
A
265 280Right-handed alpha
Helix 7
AA7
A
299 315Right-handed alpha
Helix 8
AA8
A
329 347Right-handed alpha
Helix 9
AA9
A
359 364Right-handed alpha
Helix 10
AB1
A
385 392Right-handed alpha
Helix 11
AB2
A
402 410Right-handed alpha
Helix 12
AB3
A
419 425Right-handed alpha
Helix 13
AB4
A
432 442Right-handed alpha
Helix 14
AB5
A
443 458Right-handed alpha
Helix 15
AB6
A
489 508Right-handed alpha
Helix 16
AB7
A
509 529Right-handed alpha
Helix 17
AB8
A
538 542Right-handed 310
Helix 18
AB9
A
543 558Right-handed alpha
Helix 19
AC1
A
560 562Right-handed 310
Helix 20
AC2
A
563 570Right-handed alpha
Helix 21
AC3
A
570 580Right-handed alpha
Helix 22
AC4
A
584 597Right-handed alpha
Helix 23
AC5
A
598 615Right-handed alpha
Helix 24
AC6
A
620 649Right-handed alpha
Helix 25
AC7
A
651 669Right-handed alpha
Helix 26
AC8
A
675 679Right-handed 310
Helix 27
AC9
A
683 689Right-handed alpha
Helix 28
AD1
A
690 705Right-handed alpha
Helix 29
AD2
A
725 729Right-handed 310
Helix 30
AD3
A
745 753Right-handed alpha
Helix 31
AD4
A
756 760Right-handed 310
Helix 32
AD5
A
761 785Right-handed alpha
Helix 33
AD6
A
899 908Right-handed alpha
Helix 34
AD7
A
948 961Right-handed alpha
Helix 35
AD8
A
966 982Right-handed alpha
Helix 36
AD9
A
999 1013Right-handed alpha
Helix 37
AE1
A
1030 1048Right-handed alpha
Helix 38
AE2
A
1061 1066Right-handed 310
Helix 39
AE3
A
1085 1087Right-handed 310
Helix 40
AE4
A
1088 1098Right-handed alpha
Helix 41
AE5
A
1108 1118Right-handed alpha
Helix 42
AE6
A
1128 1135Right-handed alpha
Helix 43
AE7
A
1136 1157Right-handed alpha
Helix 44
AE8
A
1171 1189Right-handed alpha
Helix 45
AE9
A
1190 1212Right-handed alpha
Helix 46
AF1
A
1218 1232Right-handed alpha
Helix 47
AF2
A
1235 1257Right-handed alpha
Helix 48
AF3
A
1265 1297Right-handed alpha
Helix 49
AF4
A
1298 1306Right-handed alpha
Helix 50
AF5
A
1307 1336Right-handed alpha
Helix 51
AF6
A
1339 1357Right-handed alpha
Helix 52
AF7
A
1368 1370Right-handed 310
Helix 53
AF8
A
1371 1378Right-handed alpha
Helix 54
AF9
A
1378 1392Right-handed alpha
Helix 55
AG1
A
1414 1419Right-handed alpha
Helix 56
AG2
A
1419 1427Right-handed alpha
Helix 57
AG3
A
1447 1455Right-handed alpha
Helix 58
AG4
A
1458 1462Right-handed 310
Helix 59
AG5
A
1463 1489Right-handed alpha
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There are 8 sheets in PDB entry 9S4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
115 117anti-parallel
Strand 3
A
210 212anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
122 124anti-parallel
Strand 3
A
202 204anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 231first strand
Strand 2
A
318 322parallel
Strand 3
A
350 354parallel
Strand 4
A
177 181parallel
Strand 5
A
368 373parallel
Strand 6
A
376 382anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
708 710first strand
Strand 2
A
742 744anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
714 715first strand
Strand 2
A
730 731anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 883first strand
Strand 2
A
857 868anti-parallel
Strand 3
A
914 921anti-parallel
Strand 4
A
924 925anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 937first strand
Strand 2
A
1020 1023parallel
Strand 3
A
1051 1054parallel
Strand 4
A
888 893parallel
Strand 5
A
1068 1073parallel
Strand 6
A
1077 1083anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1405 1407first strand
Strand 2
A
1440 1443anti-parallel
Strand 3
A
1430 1431anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il