Analysis of interatomic Contacts of Structural Units in PDB entry:
9S5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S5J entry

There are 2 chains in PDB entry 9S5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3TYR 469
X
 MET 1THR 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9S5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
14 28Right-handed alpha
Helix 3
AA3
A
29 34Right-handed 310
Helix 4
AA4
A
50 68Right-handed alpha
Helix 5
AA5
A
80 90Right-handed alpha
Helix 6
AA6
A
93 113Right-handed alpha
Helix 7
AA7
A
116 131Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
235 237Right-handed 310
Helix 10
AB1
A
255 259Right-handed 310
Helix 11
AB2
A
260 281Right-handed alpha
Helix 12
AB3
A
296 300Right-handed 310
Helix 13
AB4
A
308 313Right-handed alpha
Helix 14
AB5
A
322 345Right-handed alpha
Helix 15
AB6
A
358 373Right-handed alpha
Helix 16
AB7
A
374 383Right-handed alpha
Helix 17
AB8
A
383 395Right-handed alpha
Helix 18
AB9
A
397 402Right-handed 310
Helix 19
AC1
A
416 439Right-handed alpha
Helix 20
AC2
A
440 445Right-handed alpha
Helix 21
AC3
A
449 461Right-handed alpha
Helix 22
AC4
X
2 15Right-handed alpha
Helix 23
AC5
X
26 45Right-handed alpha
Helix 24
AC6
X
112 116Right-handed 310
Helix 25
AC7
X
117 137Right-handed alpha
Helix 26
AC8
X
140 164Right-handed alpha
Helix 27
AC9
X
172 179Right-handed alpha
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There are 7 sheets in PDB entry 9S5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
X
183 184anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
239 240anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
163 173anti-parallel
Strand 3
A
197 207anti-parallel
Strand 4
A
214 221anti-parallel
Strand 5
A
224 225anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
163 173anti-parallel
Strand 3
A
197 207anti-parallel
Strand 4
A
214 221anti-parallel
Strand 5
A
230 233anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
315 317anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
52 53first strand
Strand 2
X
105 109anti-parallel
Strand 3
X
72 77anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
82 84first strand
Strand 2
X
89 91anti-parallel
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