Analysis of interatomic Contacts of Structural Units in PDB entry:
9S5T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S5T entry

There are 9 chains in PDB entry 9S5T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 25	ILE 759
B	MET 1	ILE 292
C	MET 1	LEU 249
D	GLN 4	ASP 190
E	MET 1	VAL 137
F	THR 9	GLY 108
G	THR 1	SER 167
H	ALA 1	GLU 142
I	LYS 4	ILE 1212

There are 98 helices in PDB entry 9S5T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	90	Right-handed 310
Helix 2	AA2	A	247	269	Right-handed alpha
Helix 3	AA3	A	273	282	Right-handed alpha
Helix 4	AA4	A	290	296	Right-handed alpha
Helix 5	AA5	A	582	586	Right-handed 310
Helix 6	AA6	A	646	651	Right-handed alpha
Helix 7	AA7	A	670	672	Right-handed 310
Helix 8	AA8	A	728	757	Right-handed alpha
Helix 9	AA9	B	2	17	Right-handed alpha
Helix 10	AB1	B	18	21	Right-handed 310
Helix 11	AB2	B	23	41	Right-handed alpha
Helix 12	AB3	B	46	64	Right-handed alpha
Helix 13	AB4	B	66	81	Right-handed alpha
Helix 14	AB5	B	85	99	Right-handed alpha
Helix 15	AB6	B	101	116	Right-handed alpha
Helix 16	AB7	B	122	140	Right-handed alpha
Helix 17	AB8	B	144	159	Right-handed alpha
Helix 18	AB9	B	163	177	Right-handed alpha
Helix 19	AC1	B	180	193	Right-handed alpha
Helix 20	AC2	B	196	214	Right-handed alpha
Helix 21	AC3	B	218	237	Right-handed alpha
Helix 22	AC4	B	240	256	Right-handed alpha
Helix 23	AC5	B	260	275	Right-handed alpha
Helix 24	AC6	B	278	290	Right-handed alpha
Helix 25	AC7	C	4	10	Right-handed alpha
Helix 26	AC8	C	11	33	Right-handed alpha
Helix 27	AC9	C	43	62	Right-handed alpha
Helix 28	AD1	C	63	66	Right-handed 310
Helix 29	AD2	C	67	85	Right-handed alpha
Helix 30	AD3	C	112	140	Right-handed alpha
Helix 31	AD4	C	153	155	Right-handed 310
Helix 32	AD5	C	156	161	Right-handed alpha
Helix 33	AD6	C	175	186	Right-handed alpha
Helix 34	AD7	C	187	195	Right-handed alpha
Helix 35	AD8	C	220	233	Right-handed alpha
Helix 36	AD9	C	243	248	Right-handed alpha
Helix 37	AE1	D	7	15	Right-handed alpha
Helix 38	AE2	D	18	22	Right-handed 310
Helix 39	AE3	D	70	77	Right-handed alpha
Helix 40	AE4	D	78	94	Right-handed alpha
Helix 41	AE5	D	99	120	Right-handed alpha
Helix 42	AE6	D	124	128	Right-handed 310
Helix 43	AE7	D	133	162	Right-handed alpha
Helix 44	AE8	D	172	176	Right-handed 310
Helix 45	AE9	E	2	33	Right-handed alpha
Helix 46	AF1	E	46	67	Right-handed alpha
Helix 47	AF2	E	94	105	Right-handed alpha
Helix 48	AF3	E	110	115	Right-handed alpha
Helix 49	AF4	E	116	120	Right-handed 310
Helix 50	AF5	E	121	137	Right-handed alpha
Helix 51	AF6	F	13	42	Right-handed alpha
Helix 52	AF7	F	46	68	Right-handed alpha
Helix 53	AF8	F	72	76	Right-handed 310
Helix 54	AF9	F	79	85	Right-handed alpha
Helix 55	AG1	F	88	108	Right-handed alpha
Helix 56	AG2	G	154	157	Right-handed 310
Helix 57	AG3	G	158	167	Right-handed alpha
Helix 58	AG4	H	123	131	Right-handed alpha
Helix 59	AG5	I	32	45	Right-handed alpha
Helix 60	AG6	I	46	51	Right-handed alpha
Helix 61	AG7	I	53	78	Right-handed alpha
Helix 62	AG8	I	78	87	Right-handed alpha
Helix 63	AG9	I	157	163	Right-handed alpha
Helix 64	AH1	I	170	178	Right-handed alpha
Helix 65	AH2	I	188	198	Right-handed alpha
Helix 66	AH3	I	199	215	Right-handed alpha
Helix 67	AH4	I	217	247	Right-handed alpha
Helix 68	AH5	I	268	272	Right-handed 310
Helix 69	AH6	I	332	336	Right-handed 310
Helix 70	AH7	I	372	376	Right-handed 310
Helix 71	AH8	I	383	388	Right-handed alpha
Helix 72	AH9	I	393	424	Right-handed alpha
Helix 73	AI1	I	429	441	Right-handed alpha
Helix 74	AI2	I	446	448	Right-handed 310
Helix 75	AI3	I	449	466	Right-handed alpha
Helix 76	AI4	I	471	473	Right-handed 310
Helix 77	AI5	I	474	479	Right-handed alpha
Helix 78	AI6	I	522	532	Right-handed alpha
Helix 79	AI7	I	546	557	Right-handed alpha
Helix 80	AI8	I	606	613	Right-handed alpha
Helix 81	AI9	I	621	631	Right-handed alpha
Helix 82	AJ1	I	647	653	Right-handed alpha
Helix 83	AJ2	I	655	660	Right-handed alpha
Helix 84	AJ3	I	681	690	Right-handed alpha
Helix 85	AJ4	I	700	712	Right-handed alpha
Helix 86	AJ5	I	753	758	Right-handed alpha
Helix 87	AJ6	I	766	773	Right-handed alpha
Helix 88	AJ7	I	778	785	Right-handed alpha
Helix 89	AJ8	I	793	807	Right-handed alpha
Helix 90	AJ9	I	820	827	Right-handed alpha
Helix 91	AK1	I	972	1001	Right-handed alpha
Helix 92	AK2	I	1001	1012	Right-handed alpha
Helix 93	AK3	I	1017	1036	Right-handed alpha
Helix 94	AK4	I	1055	1083	Right-handed alpha
Helix 95	AK5	I	1099	1120	Right-handed alpha
Helix 96	AK6	I	1133	1153	Right-handed alpha
Helix 97	AK7	I	1155	1162	Right-handed alpha
Helix 98	AK8	I	1168	1197	Right-handed alpha

There are 30 sheets in PDB entry 9S5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	707	712	anti-parallel
Strand 3	A	698	703	anti-parallel
Strand 4	A	686	691	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	A	67	73	anti-parallel
Strand 4	A	79	85	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	101	105	anti-parallel
Strand 3	A	92	95	anti-parallel
Strand 4	A	133	134	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	153	154	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	179	first strand
Strand 2	A	187	190	anti-parallel
Strand 3	A	195	199	anti-parallel
Strand 4	A	208	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	226	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	310	315	anti-parallel
Strand 4	A	322	327	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	345	349	anti-parallel
Strand 3	A	355	359	anti-parallel
Strand 4	A	366	371	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	386	first strand
Strand 2	A	391	396	anti-parallel
Strand 3	A	401	405	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	453	first strand
Strand 2	A	435	442	anti-parallel
Strand 3	A	425	432	anti-parallel
Strand 4	D	185	189	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	465	first strand
Strand 2	A	493	499	anti-parallel
Strand 3	A	504	510	anti-parallel
Strand 4	A	517	523	anti-parallel
Strand 5	H	107	108	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	483	485	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	541	548	anti-parallel
Strand 3	A	554	563	anti-parallel
Strand 4	A	592	600	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	609	first strand
Strand 2	A	620	625	anti-parallel
Strand 3	A	630	634	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	668	first strand
Strand 2	H	136	137	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	173	174	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	60	first strand
Strand 2	G	5	11	anti-parallel
Strand 3	G	134	138	parallel
Strand 4	G	83	84	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	26	33	anti-parallel
Strand 3	G	69	78	anti-parallel
Strand 4	G	87	94	anti-parallel
Strand 5	G	100	107	anti-parallel
Strand 6	G	127	128	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	38	first strand
Strand 2	H	16	25	anti-parallel
Strand 3	H	2	9	anti-parallel
Strand 4	H	44	53	anti-parallel
Strand 5	H	57	59	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	38	first strand
Strand 2	H	16	25	anti-parallel
Strand 3	H	2	9	anti-parallel
Strand 4	H	44	53	anti-parallel
Strand 5	H	64	68	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	92	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	100	104	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	8	first strand
Strand 2	I	144	145	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	18	first strand
Strand 2	I	98	103	anti-parallel
Strand 3	I	111	113	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	130	first strand
Strand 2	I	133	134	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	263	265	first strand
Strand 2	I	258	260	anti-parallel
Strand 3	I	277	279	anti-parallel
Strand 4	I	366	371	anti-parallel
Strand 5	I	292	295	anti-parallel
Strand 6	I	338	339	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	314	316	first strand
Strand 2	I	299	303	anti-parallel
Strand 3	I	344	349	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	692	695	first strand
Strand 2	I	483	486	parallel
Strand 3	I	811	815	parallel
Strand 4	I	829	833	parallel
Strand 5	I	964	966	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	498	503	first strand
Strand 2	I	663	672	anti-parallel
Strand 3	I	633	643	anti-parallel
Strand 4	I	598	605	anti-parallel
Strand 5	I	588	595	anti-parallel
Strand 6	I	572	583	anti-parallel
Strand 7	I	565	568	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	498	503	first strand
Strand 2	I	663	672	anti-parallel
Strand 3	I	614	616	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	536	537	first strand
Strand 2	I	543	544	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	742	745	first strand
Strand 2	I	732	735	anti-parallel
Strand 3	I	718	723	anti-parallel
Strand 4	I	762	765	parallel
Strand 5	I	788	789	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S5T

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S5T