Analysis of interatomic Contacts of Structural Units in PDB entry:
9S5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S5U entry

There are 9 chains in PDB entry 9S5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 25	LYS 760
B	MET 1	ILE 292
C	MET 1	LEU 249
D	MET 1	ASP 190
E	MET 1	VAL 137
F	THR 9	GLY 108
G	THR 1	SER 167
H	ALA 1	GLU 142
I	MET 1	ILE 1212

There are 96 helices in PDB entry 9S5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	248	270	Right-handed alpha
Helix 2	AA2	A	273	283	Right-handed alpha
Helix 3	AA3	A	289	296	Right-handed alpha
Helix 4	AA4	A	644	649	Right-handed alpha
Helix 5	AA5	A	726	757	Right-handed alpha
Helix 6	AA6	B	2	16	Right-handed alpha
Helix 7	AA7	B	17	22	Right-handed 310
Helix 8	AA8	B	23	41	Right-handed alpha
Helix 9	AA9	B	46	64	Right-handed alpha
Helix 10	AB1	B	67	81	Right-handed alpha
Helix 11	AB2	B	85	100	Right-handed alpha
Helix 12	AB3	B	101	116	Right-handed alpha
Helix 13	AB4	B	122	141	Right-handed alpha
Helix 14	AB5	B	144	159	Right-handed alpha
Helix 15	AB6	B	162	175	Right-handed alpha
Helix 16	AB7	B	178	193	Right-handed alpha
Helix 17	AB8	B	196	214	Right-handed alpha
Helix 18	AB9	B	215	236	Right-handed alpha
Helix 19	AC1	B	240	254	Right-handed alpha
Helix 20	AC2	B	261	277	Right-handed alpha
Helix 21	AC3	B	278	292	Right-handed alpha
Helix 22	AC4	C	5	11	Right-handed alpha
Helix 23	AC5	C	11	34	Right-handed alpha
Helix 24	AC6	C	43	63	Right-handed alpha
Helix 25	AC7	C	67	84	Right-handed alpha
Helix 26	AC8	C	112	140	Right-handed alpha
Helix 27	AC9	C	153	155	Right-handed 310
Helix 28	AD1	C	156	161	Right-handed alpha
Helix 29	AD2	C	175	186	Right-handed alpha
Helix 30	AD3	C	187	195	Right-handed alpha
Helix 31	AD4	C	220	232	Right-handed alpha
Helix 32	AD5	C	241	248	Right-handed alpha
Helix 33	AD6	D	7	14	Right-handed alpha
Helix 34	AD7	D	18	22	Right-handed 310
Helix 35	AD8	D	46	78	Right-handed alpha
Helix 36	AD9	D	79	82	Right-handed 310
Helix 37	AE1	D	83	94	Right-handed alpha
Helix 38	AE2	D	99	119	Right-handed alpha
Helix 39	AE3	D	120	125	Right-handed 310
Helix 40	AE4	D	133	162	Right-handed alpha
Helix 41	AE5	D	168	176	Right-handed 310
Helix 42	AE6	E	2	32	Right-handed alpha
Helix 43	AE7	E	32	38	Right-handed alpha
Helix 44	AE8	E	46	67	Right-handed alpha
Helix 45	AE9	E	94	99	Right-handed alpha
Helix 46	AF1	E	99	106	Right-handed alpha
Helix 47	AF2	E	110	115	Right-handed alpha
Helix 48	AF3	E	121	137	Right-handed alpha
Helix 49	AF4	F	13	43	Right-handed alpha
Helix 50	AF5	F	46	68	Right-handed alpha
Helix 51	AF6	F	72	77	Right-handed alpha
Helix 52	AF7	F	79	85	Right-handed alpha
Helix 53	AF8	F	88	108	Right-handed alpha
Helix 54	AF9	G	154	157	Right-handed 310
Helix 55	AG1	G	158	167	Right-handed alpha
Helix 56	AG2	H	123	133	Right-handed alpha
Helix 57	AG3	H	134	138	Right-handed 310
Helix 58	AG4	I	32	45	Right-handed alpha
Helix 59	AG5	I	53	74	Right-handed alpha
Helix 60	AG6	I	75	77	Right-handed 310
Helix 61	AG7	I	78	86	Right-handed alpha
Helix 62	AG8	I	156	163	Right-handed alpha
Helix 63	AG9	I	170	177	Right-handed alpha
Helix 64	AH1	I	188	197	Right-handed alpha
Helix 65	AH2	I	199	215	Right-handed alpha
Helix 66	AH3	I	218	248	Right-handed alpha
Helix 67	AH4	I	332	338	Right-handed 310
Helix 68	AH5	I	372	375	Right-handed 310
Helix 69	AH6	I	376	387	Right-handed alpha
Helix 70	AH7	I	392	395	Right-handed 310
Helix 71	AH8	I	396	425	Right-handed alpha
Helix 72	AH9	I	427	443	Right-handed alpha
Helix 73	AI1	I	449	465	Right-handed alpha
Helix 74	AI2	I	474	479	Right-handed alpha
Helix 75	AI3	I	522	532	Right-handed alpha
Helix 76	AI4	I	546	557	Right-handed alpha
Helix 77	AI5	I	606	614	Right-handed alpha
Helix 78	AI6	I	621	631	Right-handed alpha
Helix 79	AI7	I	647	652	Right-handed alpha
Helix 80	AI8	I	655	660	Right-handed alpha
Helix 81	AI9	I	681	689	Right-handed alpha
Helix 82	AJ1	I	700	712	Right-handed alpha
Helix 83	AJ2	I	767	773	Right-handed alpha
Helix 84	AJ3	I	778	784	Right-handed alpha
Helix 85	AJ4	I	793	806	Right-handed alpha
Helix 86	AJ5	I	820	826	Right-handed alpha
Helix 87	AJ6	I	836	868	Right-handed alpha
Helix 88	AJ7	I	890	899	Right-handed alpha
Helix 89	AJ8	I	903	915	Right-handed alpha
Helix 90	AJ9	I	971	1013	Right-handed alpha
Helix 91	AK1	I	1017	1035	Right-handed alpha
Helix 92	AK2	I	1055	1084	Right-handed alpha
Helix 93	AK3	I	1099	1120	Right-handed alpha
Helix 94	AK4	I	1134	1152	Right-handed alpha
Helix 95	AK5	I	1155	1162	Right-handed alpha
Helix 96	AK6	I	1168	1197	Right-handed alpha

There are 29 sheets in PDB entry 9S5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	707	712	anti-parallel
Strand 3	A	698	703	anti-parallel
Strand 4	A	686	691	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	A	67	73	anti-parallel
Strand 4	A	78	85	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	101	105	anti-parallel
Strand 4	A	92	95	anti-parallel
Strand 5	A	133	134	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	152	155	anti-parallel
Strand 3	A	167	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	180	first strand
Strand 2	A	186	190	anti-parallel
Strand 3	A	195	202	anti-parallel
Strand 4	A	205	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	226	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	310	315	anti-parallel
Strand 4	A	322	327	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	338	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	354	360	anti-parallel
Strand 4	A	365	372	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	384	first strand
Strand 2	A	391	396	anti-parallel
Strand 3	A	401	405	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	453	first strand
Strand 2	A	435	442	anti-parallel
Strand 3	A	426	432	anti-parallel
Strand 4	D	187	189	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	465	first strand
Strand 2	A	492	499	anti-parallel
Strand 3	A	504	511	anti-parallel
Strand 4	A	516	523	anti-parallel
Strand 5	H	107	108	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	483	485	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	541	548	anti-parallel
Strand 3	A	554	563	anti-parallel
Strand 4	A	592	600	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	609	first strand
Strand 2	A	620	625	anti-parallel
Strand 3	A	630	634	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	173	174	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	84	85	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	61	first strand
Strand 2	G	4	11	anti-parallel
Strand 3	G	134	138	parallel
Strand 4	G	83	84	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	26	33	anti-parallel
Strand 3	G	69	78	anti-parallel
Strand 4	G	87	94	anti-parallel
Strand 5	G	100	107	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	38	first strand
Strand 2	H	16	25	anti-parallel
Strand 3	H	2	9	anti-parallel
Strand 4	H	44	53	anti-parallel
Strand 5	H	57	68	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	92	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	99	104	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	8	first strand
Strand 2	I	143	145	parallel
Strand 3	I	133	138	anti-parallel
Strand 4	I	127	130	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	18	first strand
Strand 2	I	98	103	anti-parallel
Strand 3	I	111	113	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	256	260	first strand
Strand 2	I	263	267	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	277	280	first strand
Strand 2	I	365	371	anti-parallel
Strand 3	I	292	297	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	310	316	first strand
Strand 2	I	299	304	anti-parallel
Strand 3	I	344	349	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	467	469	first strand
Strand 2	I	964	966	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	692	695	first strand
Strand 2	I	483	486	parallel
Strand 3	I	811	815	parallel
Strand 4	I	829	832	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	498	503	first strand
Strand 2	I	664	672	anti-parallel
Strand 3	I	633	641	anti-parallel
Strand 4	I	599	605	anti-parallel
Strand 5	I	588	595	anti-parallel
Strand 6	I	572	579	anti-parallel
Strand 7	I	565	568	anti-parallel
Strand 8	I	559	560	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	536	537	first strand
Strand 2	I	543	544	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	742	745	first strand
Strand 2	I	732	735	anti-parallel
Strand 3	I	718	723	anti-parallel
Strand 4	I	762	766	parallel
Strand 5	I	789	790	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S5U