Analysis of interatomic Contacts of Structural Units in PDB entry:
9S63


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S63 entry

There are 4 chains in PDB entry 9S63 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7PRO 277
B
 ASP 11GLN 260
C
 GLY 1LEU 238
D
 ASN 31LEU 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9S63. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
37 42Right-handed alpha
Helix 3
AA3
A
53 56Right-handed 310
Helix 4
AA4
A
57 63Right-handed alpha
Helix 5
AA5
A
81 85Right-handed 310
Helix 6
AA6
A
95 103Right-handed alpha
Helix 7
AA7
B
81 86Right-handed alpha
Helix 8
AA8
B
89 99Right-handed alpha
Helix 9
AA9
B
177 184Right-handed 310
Helix 10
AB1
C
42 49Right-handed 310
Helix 11
AB2
C
99 106Right-handed alpha
Helix 12
AB3
C
145 150Right-handed alpha
Helix 13
AB4
D
50 55Right-handed alpha
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There are 12 sheets in PDB entry 9S63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
227 238anti-parallel
Strand 3
A
111 122anti-parallel
Strand 4
A
175 178anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
213 218anti-parallel
Strand 3
A
136 142anti-parallel
Strand 4
A
164 168anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
242 245anti-parallel
Strand 4
C
39 40anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
24 25anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
196 200parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
196 200parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
239 245anti-parallel
Strand 5
B
69 70anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
78 80anti-parallel
Strand 3
B
219 229anti-parallel
Strand 4
B
119 127anti-parallel
Strand 5
B
186 190anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
250 252anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 217anti-parallel
Strand 3
C
70 73anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
208 217anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
164 168anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 87first strand
Strand 2
C
190 194anti-parallel
Strand 3
C
129 136anti-parallel
Strand 4
C
154 159anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
110 112anti-parallel
Strand 3
C
222 223anti-parallel
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