Analysis of interatomic Contacts of Structural Units in PDB entry:
9S6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S6C entry

There are 2 chains in PDB entry 9S6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 15	ASN 351
A	GLY 13	TYR 339

There are 12 helices in PDB entry 9S6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	46	52	Right-handed alpha
Helix 2	AA2	C	140	143	Right-handed 310
Helix 3	AA3	C	174	178	Right-handed alpha
Helix 4	AA4	C	246	250	Right-handed 310
Helix 5	AA5	A	46	52	Right-handed alpha
Helix 6	AA6	A	140	143	Right-handed 310
Helix 7	AA7	A	174	178	Right-handed alpha
Helix 8	AA8	A	246	250	Right-handed 310
Helix 9	AA9	B	46	52	Right-handed alpha
Helix 10	AB1	B	140	143	Right-handed 310
Helix 11	AB2	B	174	178	Right-handed alpha
Helix 12	AB3	B	246	250	Right-handed 310

There are 21 sheets in PDB entry 9S6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	17	22	anti-parallel
Strand 4	C	345	349	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	70	74	anti-parallel
Strand 3	C	81	84	anti-parallel
Strand 4	C	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	108	first strand
Strand 2	C	113	117	anti-parallel
Strand 3	C	122	126	anti-parallel
Strand 4	C	132	135	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	151	first strand
Strand 2	C	154	159	anti-parallel
Strand 3	C	170	173	anti-parallel
Strand 4	C	191	192	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	222	227	anti-parallel
Strand 4	C	233	237	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	263	267	anti-parallel
Strand 3	C	270	274	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	303	first strand
Strand 2	C	308	315	anti-parallel
Strand 3	C	320	327	anti-parallel
Strand 4	C	333	340	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	32	37	anti-parallel
Strand 3	A	17	22	anti-parallel
Strand 4	A	345	349	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	81	84	anti-parallel
Strand 4	A	91	94	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	108	first strand
Strand 2	A	113	118	anti-parallel
Strand 3	A	122	126	anti-parallel
Strand 4	A	132	135	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	151	first strand
Strand 2	A	154	159	anti-parallel
Strand 3	A	170	173	anti-parallel
Strand 4	A	191	192	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	222	227	anti-parallel
Strand 4	A	233	237	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	263	267	anti-parallel
Strand 3	A	270	274	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	303	first strand
Strand 2	A	308	315	anti-parallel
Strand 3	A	320	327	anti-parallel
Strand 4	A	333	340	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	32	37	anti-parallel
Strand 3	B	17	22	anti-parallel
Strand 4	B	345	349	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	81	84	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	108	first strand
Strand 2	B	113	117	anti-parallel
Strand 3	B	122	126	anti-parallel
Strand 4	B	132	135	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	151	first strand
Strand 2	B	154	159	anti-parallel
Strand 3	B	170	173	anti-parallel
Strand 4	B	191	192	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	211	216	anti-parallel
Strand 3	B	222	227	anti-parallel
Strand 4	B	233	237	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	257	first strand
Strand 2	B	263	267	anti-parallel
Strand 3	B	270	274	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	303	first strand
Strand 2	B	308	315	anti-parallel
Strand 3	B	320	327	anti-parallel
Strand 4	B	333	340	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S6C