Analysis of interatomic Contacts of Structural Units in PDB entry:
9S6K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S6K entry

There are 4 chains in PDB entry 9S6K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	SER 114
B	ALA 3	HIS 339
C	GLN 1	SER 114
D	GLU 8	MET 338

There are 38 helices in PDB entry 9S6K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	B	6	24	Right-handed alpha
Helix 3	AA3	B	28	43	Right-handed alpha
Helix 4	AA4	B	55	69	Right-handed alpha
Helix 5	AA5	B	72	81	Right-handed alpha
Helix 6	AA6	B	91	99	Right-handed alpha
Helix 7	AA7	B	100	114	Right-handed alpha
Helix 8	AA8	B	125	136	Right-handed alpha
Helix 9	AA9	B	138	155	Right-handed alpha
Helix 10	AB1	B	156	159	Right-handed 310
Helix 11	AB2	B	160	174	Right-handed alpha
Helix 12	AB3	B	174	182	Right-handed alpha
Helix 13	AB4	B	184	200	Right-handed alpha
Helix 14	AB5	B	200	211	Right-handed alpha
Helix 15	AB6	B	214	236	Right-handed alpha
Helix 16	AB7	B	249	257	Right-handed alpha
Helix 17	AB8	B	281	295	Right-handed alpha
Helix 18	AB9	B	324	326	Right-handed 310
Helix 19	AC1	C	27	31	Right-handed 310
Helix 20	AC2	C	62	65	Right-handed 310
Helix 21	AC3	C	87	91	Right-handed 310
Helix 22	AC4	D	12	24	Right-handed alpha
Helix 23	AC5	D	28	43	Right-handed alpha
Helix 24	AC6	D	55	69	Right-handed alpha
Helix 25	AC7	D	72	81	Right-handed alpha
Helix 26	AC8	D	91	99	Right-handed alpha
Helix 27	AC9	D	100	115	Right-handed alpha
Helix 28	AD1	D	125	134	Right-handed alpha
Helix 29	AD2	D	138	155	Right-handed alpha
Helix 30	AD3	D	156	159	Right-handed 310
Helix 31	AD4	D	160	174	Right-handed alpha
Helix 32	AD5	D	174	182	Right-handed alpha
Helix 33	AD6	D	184	200	Right-handed alpha
Helix 34	AD7	D	200	211	Right-handed alpha
Helix 35	AD8	D	214	236	Right-handed alpha
Helix 36	AD9	D	249	258	Right-handed alpha
Helix 37	AE1	D	281	295	Right-handed alpha
Helix 38	AE2	D	324	326	Right-handed 310

There are 6 sheets in PDB entry 9S6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	109	113	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	328	334	parallel
Strand 4	B	317	322	anti-parallel
Strand 5	B	297	304	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	109	113	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	246	first strand
Strand 2	D	270	276	anti-parallel
Strand 3	D	328	334	parallel
Strand 4	D	317	322	anti-parallel
Strand 5	D	297	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S6K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S6K