Analysis of interatomic Contacts of Structural Units in PDB entry:
9S6Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S6Y entry

There are 3 chains in PDB entry 9S6Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1CYS 220
B
 GLU 1PRO 237
C
 LYS 19GLY 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9S6Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
127 132Right-handed alpha
Helix 2
AA2
A
188 195Right-handed alpha
Helix 3
AA3
B
28 30Right-handed 310
Helix 4
AA4
B
62 65Right-handed 310
Helix 5
AA5
B
87 91Right-handed 310
Helix 6
AA6
B
105 110Right-handed 310
Helix 7
AA7
B
211 213Right-handed 310
Helix 8
AA8
C
282 292Right-handed alpha
Helix 9
AA9
C
325 332Right-handed alpha
Helix 10
AB1
C
337 341Right-handed 310
Helix 11
AB2
C
352 354Right-handed 310
Helix 12
AB3
C
355 360Right-handed alpha
Helix 13
AB4
C
372 376Right-handed 310
Helix 14
AB5
C
391 398Right-handed 310
Helix 15
AB6
C
404 410Right-handed alpha
Helix 16
AB7
C
426 431Right-handed alpha
Helix 17
AB8
C
489 493Right-handed 310
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There are 18 sheets in PDB entry 9S6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
76 81anti-parallel
Strand 4
A
68 71anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
108 111parallel
Strand 3
A
91 96anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
51 55anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 145first strand
Strand 2
A
179 187anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
211 216anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
22 25anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
131 135parallel
Strand 3
B
92 103anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
59 60anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
82 84anti-parallel
Strand 3
B
68 69anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
78 79anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
159 169anti-parallel
Strand 3
B
200 209anti-parallel
Strand 4
B
187 189anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 148first strand
Strand 2
B
159 169anti-parallel
Strand 3
B
200 209anti-parallel
Strand 4
B
193 194anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
218 224anti-parallel
Strand 3
B
229 235anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 34first strand
Strand 2
C
67 71anti-parallel
Strand 3
C
251 255anti-parallel
Strand 4
C
88 94anti-parallel
Strand 5
C
182 191anti-parallel
Strand 6
C
194 201anti-parallel
Strand 7
C
218 223anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 60first strand
Strand 2
C
259 266anti-parallel
Strand 3
C
276 278anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
231 235anti-parallel
Strand 3
C
101 105anti-parallel
Strand 4
C
114 119anti-parallel
Strand 5
C
124 128anti-parallel
Strand 6
C
162 165anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 149first strand
Strand 2
C
139 142anti-parallel
Strand 3
C
237 238parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 316first strand
Strand 2
C
525 530parallel
Strand 3
C
533 541anti-parallel
Strand 4
C
571 575anti-parallel
Strand 5
C
562 564anti-parallel
Strand 6
C
552 553anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 346first strand
Strand 2
C
383 386anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
440 442first strand
Strand 2
C
479 481anti-parallel
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