Analysis of interatomic Contacts of Structural Units in PDB entry:
9S7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S7J entry

There are 4 chains in PDB entry 9S7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 554
B	ALA 2	ARG 554
C	ALA 2	ARG 554
D	ALA 2	ARG 554

There are 92 helices in PDB entry 9S7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	17	Right-handed alpha
Helix 2	AA2	A	29	38	Right-handed alpha
Helix 3	AA3	A	49	65	Right-handed alpha
Helix 4	AA4	A	76	91	Right-handed alpha
Helix 5	AA5	A	122	130	Right-handed alpha
Helix 6	AA6	A	143	159	Right-handed alpha
Helix 7	AA7	A	191	206	Right-handed alpha
Helix 8	AA8	A	219	224	Right-handed alpha
Helix 9	AA9	A	225	237	Right-handed alpha
Helix 10	AB1	A	262	266	Right-handed 310
Helix 11	AB2	A	270	276	Right-handed alpha
Helix 12	AB3	A	323	334	Right-handed alpha
Helix 13	AB4	A	338	343	Right-handed 310
Helix 14	AB5	A	362	374	Right-handed alpha
Helix 15	AB6	A	385	394	Right-handed alpha
Helix 16	AB7	A	413	425	Right-handed alpha
Helix 17	AB8	A	436	442	Right-handed alpha
Helix 18	AB9	A	443	453	Right-handed alpha
Helix 19	AC1	A	466	473	Right-handed alpha
Helix 20	AC2	A	475	479	Right-handed 310
Helix 21	AC3	A	484	494	Right-handed alpha
Helix 22	AC4	A	506	520	Right-handed alpha
Helix 23	AC5	A	537	552	Right-handed alpha
Helix 24	AC6	B	4	17	Right-handed alpha
Helix 25	AC7	B	29	38	Right-handed alpha
Helix 26	AC8	B	49	65	Right-handed alpha
Helix 27	AC9	B	76	91	Right-handed alpha
Helix 28	AD1	B	122	130	Right-handed alpha
Helix 29	AD2	B	143	159	Right-handed alpha
Helix 30	AD3	B	191	206	Right-handed alpha
Helix 31	AD4	B	219	224	Right-handed alpha
Helix 32	AD5	B	225	237	Right-handed alpha
Helix 33	AD6	B	262	266	Right-handed 310
Helix 34	AD7	B	270	276	Right-handed alpha
Helix 35	AD8	B	323	334	Right-handed alpha
Helix 36	AD9	B	338	343	Right-handed 310
Helix 37	AE1	B	362	374	Right-handed alpha
Helix 38	AE2	B	385	394	Right-handed alpha
Helix 39	AE3	B	413	425	Right-handed alpha
Helix 40	AE4	B	436	442	Right-handed alpha
Helix 41	AE5	B	443	453	Right-handed alpha
Helix 42	AE6	B	466	473	Right-handed alpha
Helix 43	AE7	B	475	479	Right-handed 310
Helix 44	AE8	B	484	494	Right-handed alpha
Helix 45	AE9	B	506	520	Right-handed alpha
Helix 46	AF1	B	537	552	Right-handed alpha
Helix 47	AF2	C	4	17	Right-handed alpha
Helix 48	AF3	C	29	38	Right-handed alpha
Helix 49	AF4	C	49	65	Right-handed alpha
Helix 50	AF5	C	76	91	Right-handed alpha
Helix 51	AF6	C	122	130	Right-handed alpha
Helix 52	AF7	C	143	159	Right-handed alpha
Helix 53	AF8	C	191	206	Right-handed alpha
Helix 54	AF9	C	219	224	Right-handed alpha
Helix 55	AG1	C	225	237	Right-handed alpha
Helix 56	AG2	C	262	266	Right-handed 310
Helix 57	AG3	C	270	276	Right-handed alpha
Helix 58	AG4	C	323	334	Right-handed alpha
Helix 59	AG5	C	338	343	Right-handed 310
Helix 60	AG6	C	362	374	Right-handed alpha
Helix 61	AG7	C	385	394	Right-handed alpha
Helix 62	AG8	C	413	425	Right-handed alpha
Helix 63	AG9	C	436	442	Right-handed alpha
Helix 64	AH1	C	443	453	Right-handed alpha
Helix 65	AH2	C	466	473	Right-handed alpha
Helix 66	AH3	C	475	479	Right-handed 310
Helix 67	AH4	C	484	494	Right-handed alpha
Helix 68	AH5	C	506	520	Right-handed alpha
Helix 69	AH6	C	537	552	Right-handed alpha
Helix 70	AH7	D	4	17	Right-handed alpha
Helix 71	AH8	D	29	38	Right-handed alpha
Helix 72	AH9	D	49	65	Right-handed alpha
Helix 73	AI1	D	76	91	Right-handed alpha
Helix 74	AI2	D	122	130	Right-handed alpha
Helix 75	AI3	D	143	159	Right-handed alpha
Helix 76	AI4	D	191	206	Right-handed alpha
Helix 77	AI5	D	219	224	Right-handed alpha
Helix 78	AI6	D	225	237	Right-handed alpha
Helix 79	AI7	D	262	266	Right-handed 310
Helix 80	AI8	D	270	276	Right-handed alpha
Helix 81	AI9	D	323	334	Right-handed alpha
Helix 82	AJ1	D	338	343	Right-handed 310
Helix 83	AJ2	D	362	374	Right-handed alpha
Helix 84	AJ3	D	385	394	Right-handed alpha
Helix 85	AJ4	D	413	425	Right-handed alpha
Helix 86	AJ5	D	436	442	Right-handed alpha
Helix 87	AJ6	D	443	453	Right-handed alpha
Helix 88	AJ7	D	466	473	Right-handed alpha
Helix 89	AJ8	D	475	479	Right-handed 310
Helix 90	AJ9	D	484	494	Right-handed alpha
Helix 91	AK1	D	506	520	Right-handed alpha
Helix 92	AK2	D	537	552	Right-handed alpha

There are 12 sheets in PDB entry 9S7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	20	23	parallel
Strand 3	A	67	71	parallel
Strand 4	A	94	100	parallel
Strand 5	A	162	167	parallel
Strand 6	A	134	138	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	178	first strand
Strand 2	B	317	320	parallel
Strand 3	B	311	314	anti-parallel
Strand 4	B	304	307	anti-parallel
Strand 5	B	279	283	parallel
Strand 6	B	212	216	parallel
Strand 7	B	239	242	parallel
Strand 8	B	257	260	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	239	242	parallel
Strand 3	A	212	216	parallel
Strand 4	A	279	283	parallel
Strand 5	A	304	307	parallel
Strand 6	A	311	314	anti-parallel
Strand 7	A	317	320	anti-parallel
Strand 8	B	177	178	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	378	382	parallel
Strand 3	A	429	435	parallel
Strand 4	A	456	462	parallel
Strand 5	A	525	530	parallel
Strand 6	A	500	504	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	20	23	parallel
Strand 3	B	67	71	parallel
Strand 4	B	94	100	parallel
Strand 5	B	162	167	parallel
Strand 6	B	134	138	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	404	first strand
Strand 2	B	378	382	parallel
Strand 3	B	429	435	parallel
Strand 4	B	456	462	parallel
Strand 5	B	525	530	parallel
Strand 6	B	500	504	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	20	23	parallel
Strand 3	C	67	71	parallel
Strand 4	C	94	100	parallel
Strand 5	C	162	167	parallel
Strand 6	C	134	138	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	D	317	320	parallel
Strand 3	D	311	314	anti-parallel
Strand 4	D	304	307	anti-parallel
Strand 5	D	279	283	parallel
Strand 6	D	212	216	parallel
Strand 7	D	239	242	parallel
Strand 8	D	257	260	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	239	242	parallel
Strand 3	C	212	216	parallel
Strand 4	C	279	283	parallel
Strand 5	C	304	307	parallel
Strand 6	C	311	314	anti-parallel
Strand 7	C	317	320	anti-parallel
Strand 8	D	177	178	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	404	first strand
Strand 2	C	378	382	parallel
Strand 3	C	429	435	parallel
Strand 4	C	456	462	parallel
Strand 5	C	525	530	parallel
Strand 6	C	500	504	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	20	23	parallel
Strand 3	D	67	71	parallel
Strand 4	D	94	100	parallel
Strand 5	D	162	167	parallel
Strand 6	D	134	138	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	404	first strand
Strand 2	D	378	382	parallel
Strand 3	D	429	435	parallel
Strand 4	D	456	462	parallel
Strand 5	D	525	530	parallel
Strand 6	D	500	504	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S7J