Analysis of interatomic Contacts of Structural Units in PDB entry:
9S7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S7S entry

There are 4 chains in PDB entry 9S7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3TYR 476
B
 HIS 3TYR 476
C
 GLN 1THR 511
D
 VAL 2GLY 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9S7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 37Right-handed alpha
Helix 2
AA2
A
39 44Right-handed alpha
Helix 3
AA3
A
48 70Right-handed alpha
Helix 4
AA4
A
79 106Right-handed alpha
Helix 5
AA5
A
110 139Right-handed alpha
Helix 6
AA6
A
152 165Right-handed alpha
Helix 7
AA7
A
198 204Right-handed alpha
Helix 8
AA8
A
219 233Right-handed alpha
Helix 9
AA9
A
273 308Right-handed alpha
Helix 10
AB1
A
322 324Right-handed 310
Helix 11
AB2
A
373 380Right-handed alpha
Helix 12
AB3
A
381 384Right-handed 310
Helix 13
AB4
A
385 392Right-handed alpha
Helix 14
AB5
A
404 411Right-handed alpha
Helix 15
AB6
A
414 419Right-handed alpha
Helix 16
AB7
A
427 432Right-handed alpha
Helix 17
AB8
A
438 452Right-handed alpha
Helix 18
AB9
A
454 473Right-handed alpha
Helix 19
AC1
B
4 37Right-handed alpha
Helix 20
AC2
B
39 44Right-handed alpha
Helix 21
AC3
B
49 70Right-handed alpha
Helix 22
AC4
B
79 106Right-handed alpha
Helix 23
AC5
B
110 139Right-handed alpha
Helix 24
AC6
B
152 165Right-handed alpha
Helix 25
AC7
B
200 204Right-handed 310
Helix 26
AC8
B
216 218Right-handed 310
Helix 27
AC9
B
219 234Right-handed alpha
Helix 28
AD1
B
273 308Right-handed alpha
Helix 29
AD2
B
370 380Right-handed alpha
Helix 30
AD3
B
381 384Right-handed 310
Helix 31
AD4
B
385 392Right-handed alpha
Helix 32
AD5
B
404 409Right-handed 310
Helix 33
AD6
B
414 419Right-handed alpha
Helix 34
AD7
B
427 432Right-handed alpha
Helix 35
AD8
B
438 452Right-handed alpha
Helix 36
AD9
B
454 474Right-handed alpha
Helix 37
AE1
C
437 441Right-handed 310
Helix 38
AE2
C
472 476Right-handed 310
Helix 39
AE3
C
491 497Right-handed alpha
Helix 40
AE4
C
498 501Right-handed 310
Helix 41
AE5
D
425 429Right-handed 310
Helix 42
AE6
D
447 450Right-handed 310
Helix 43
AE7
D
492 496Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9S7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
170 177parallel
Strand 3
A
144 149parallel
Strand 4
A
210 213parallel
Strand 5
A
238 240parallel
Strand 6
B
262 266anti-parallel
Strand 7
B
254 257anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
262 266anti-parallel
Strand 3
B
238 240anti-parallel
Strand 4
B
210 213parallel
Strand 5
B
144 147parallel
Strand 6
B
170 177parallel
Strand 7
B
193 196parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
330 332anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 320first strand
Strand 2
A
326 327anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
B
326 328anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
405 409anti-parallel
Strand 3
C
463 466anti-parallel
Strand 4
C
455 458anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
444 445first strand
Strand 2
C
431 436anti-parallel
Strand 3
C
418 424anti-parallel
Strand 4
C
478 484anti-parallel
Strand 5
C
503 504anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
434 436first strand
Strand 2
D
443 445anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il