Analysis of interatomic Contacts of Structural Units in PDB entry:
9S80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S80 entry

There are 2 chains in PDB entry 9S80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 31	SER 757
B	VAL 31	SER 757

There are 48 helices in PDB entry 9S80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	44	Right-handed alpha
Helix 2	AA2	A	94	99	Right-handed alpha
Helix 3	AA3	A	139	148	Right-handed alpha
Helix 4	AA4	A	218	220	Right-handed 310
Helix 5	AA5	A	244	250	Right-handed 310
Helix 6	AA6	A	271	276	Right-handed 310
Helix 7	AA7	A	294	301	Right-handed 310
Helix 8	AA8	A	319	325	Right-handed 310
Helix 9	AA9	A	341	346	Right-handed alpha
Helix 10	AB1	A	347	350	Right-handed 310
Helix 11	AB2	A	368	374	Right-handed 310
Helix 12	AB3	A	393	398	Right-handed 310
Helix 13	AB4	A	419	425	Right-handed 310
Helix 14	AB5	A	492	498	Right-handed 310
Helix 15	AB6	A	516	522	Right-handed 310
Helix 16	AB7	A	540	546	Right-handed 310
Helix 17	AB8	A	564	569	Right-handed 310
Helix 18	AB9	A	608	614	Right-handed alpha
Helix 19	AC1	A	615	620	Right-handed alpha
Helix 20	AC2	A	656	662	Right-handed 310
Helix 21	AC3	A	680	686	Right-handed 310
Helix 22	AC4	A	704	710	Right-handed 310
Helix 23	AC5	A	732	736	Right-handed 310
Helix 24	AC6	A	737	741	Right-handed 310
Helix 25	AC7	B	32	44	Right-handed alpha
Helix 26	AC8	B	51	56	Right-handed 310
Helix 27	AC9	B	94	99	Right-handed alpha
Helix 28	AD1	B	139	148	Right-handed alpha
Helix 29	AD2	B	218	220	Right-handed 310
Helix 30	AD3	B	244	250	Right-handed 310
Helix 31	AD4	B	271	276	Right-handed 310
Helix 32	AD5	B	294	301	Right-handed 310
Helix 33	AD6	B	319	325	Right-handed 310
Helix 34	AD7	B	341	346	Right-handed alpha
Helix 35	AD8	B	347	350	Right-handed 310
Helix 36	AD9	B	368	374	Right-handed 310
Helix 37	AE1	B	419	425	Right-handed 310
Helix 38	AE2	B	443	448	Right-handed alpha
Helix 39	AE3	B	492	498	Right-handed 310
Helix 40	AE4	B	516	522	Right-handed 310
Helix 41	AE5	B	540	546	Right-handed 310
Helix 42	AE6	B	564	569	Right-handed 310
Helix 43	AE7	B	608	614	Right-handed alpha
Helix 44	AE8	B	615	620	Right-handed alpha
Helix 45	AE9	B	656	662	Right-handed 310
Helix 46	AF1	B	680	686	Right-handed 310
Helix 47	AF2	B	704	710	Right-handed 310
Helix 48	AF3	B	737	741	Right-handed 310

There are 19 sheets in PDB entry 9S80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 25 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	78	82	anti-parallel
Strand 3	A	105	107	parallel
Strand 4	A	128	130	parallel
Strand 5	A	154	156	parallel
Strand 6	A	179	181	parallel
Strand 7	A	205	207	parallel
Strand 8	A	230	232	parallel
Strand 9	A	255	257	parallel
Strand 10	A	281	283	parallel
Strand 11	A	306	308	parallel
Strand 12	A	330	332	parallel
Strand 13	A	355	357	parallel
Strand 14	A	379	381	parallel
Strand 15	A	406	408	parallel
Strand 16	A	430	432	parallel
Strand 17	A	454	456	parallel
Strand 18	A	479	481	parallel
Strand 19	A	503	505	parallel
Strand 20	A	527	529	parallel
Strand 21	A	551	553	parallel
Strand 22	A	643	645	parallel
Strand 23	A	667	669	parallel
Strand 24	A	691	693	parallel
Strand 25	A	715	717	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	112	115	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	186	190	parallel
Strand 3	A	212	216	parallel
Strand 4	A	237	239	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	288	291	parallel
Strand 3	A	313	314	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	386	388	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	416	first strand
Strand 2	A	437	441	parallel
Strand 3	A	461	463	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	603	first strand
Strand 2	A	583	589	anti-parallel
Strand 3	A	624	630	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	701	first strand
Strand 2	A	722	723	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	726	first strand
Strand 2	A	747	748	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	89	92	anti-parallel
Strand 3	B	112	115	parallel

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There are 25 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	78	82	anti-parallel
Strand 3	B	105	107	parallel
Strand 4	B	128	130	parallel
Strand 5	B	154	156	parallel
Strand 6	B	179	181	parallel
Strand 7	B	205	207	parallel
Strand 8	B	230	232	parallel
Strand 9	B	255	257	parallel
Strand 10	B	281	283	parallel
Strand 11	B	306	308	parallel
Strand 12	B	330	332	parallel
Strand 13	B	355	357	parallel
Strand 14	B	379	381	parallel
Strand 15	B	406	408	parallel
Strand 16	B	430	432	parallel
Strand 17	B	454	456	parallel
Strand 18	B	479	481	parallel
Strand 19	B	503	505	parallel
Strand 20	B	527	529	parallel
Strand 21	B	551	553	parallel
Strand 22	B	643	645	parallel
Strand 23	B	667	669	parallel
Strand 24	B	691	693	parallel
Strand 25	B	715	717	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	186	190	parallel
Strand 3	B	212	216	parallel
Strand 4	B	237	239	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	288	289	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	316	first strand
Strand 2	B	337	338	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	386	389	parallel
Strand 3	B	413	416	parallel
Strand 4	B	437	441	parallel
Strand 5	B	461	463	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	489	first strand
Strand 2	B	510	511	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	600	603	first strand
Strand 2	B	583	589	anti-parallel
Strand 3	B	624	630	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	674	677	parallel
Strand 3	B	698	701	parallel
Strand 4	B	722	723	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	726	first strand
Strand 2	B	747	748	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S80