Analysis of interatomic Contacts of Structural Units in PDB entry:
9S85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S85 entry

There are 2 chains in PDB entry 9S85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	ARG 511
B	THR 25	GLN 510

There are 37 helices in PDB entry 9S85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	55	64	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	90	94	Right-handed 310
Helix 5	AA5	A	114	122	Right-handed alpha
Helix 6	AA6	A	152	156	Right-handed 310
Helix 7	AA7	A	207	211	Right-handed 310
Helix 8	AA8	A	236	240	Right-handed 310
Helix 9	AA9	A	242	244	Right-handed 310
Helix 10	AB1	A	245	264	Right-handed alpha
Helix 11	AB2	A	284	288	Right-handed 310
Helix 12	AB3	A	293	317	Right-handed alpha
Helix 13	AB4	A	342	348	Right-handed alpha
Helix 14	AB5	A	364	368	Right-handed 310
Helix 15	AB6	A	394	404	Right-handed alpha
Helix 16	AB7	A	417	422	Right-handed alpha
Helix 17	AB8	A	490	493	Right-handed 310
Helix 18	AB9	A	494	511	Right-handed alpha
Helix 19	AC1	B	45	49	Right-handed 310
Helix 20	AC2	B	55	64	Right-handed alpha
Helix 21	AC3	B	77	88	Right-handed alpha
Helix 22	AC4	B	90	94	Right-handed 310
Helix 23	AC5	B	114	122	Right-handed alpha
Helix 24	AC6	B	152	157	Right-handed 310
Helix 25	AC7	B	207	211	Right-handed 310
Helix 26	AC8	B	236	240	Right-handed 310
Helix 27	AC9	B	242	244	Right-handed 310
Helix 28	AD1	B	245	264	Right-handed alpha
Helix 29	AD2	B	284	288	Right-handed 310
Helix 30	AD3	B	293	317	Right-handed alpha
Helix 31	AD4	B	319	321	Right-handed 310
Helix 32	AD5	B	342	347	Right-handed alpha
Helix 33	AD6	B	364	368	Right-handed 310
Helix 34	AD7	B	394	404	Right-handed alpha
Helix 35	AD8	B	417	422	Right-handed alpha
Helix 36	AD9	B	490	493	Right-handed 310
Helix 37	AE1	B	494	510	Right-handed alpha

There are 12 sheets in PDB entry 9S85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	175	177	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	125	131	parallel
Strand 5	A	268	273	parallel
Strand 6	A	31	37	parallel
Strand 7	A	323	329	parallel
Strand 8	A	372	375	anti-parallel
Strand 9	A	66	68	anti-parallel
Strand 10	A	384	386	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	390	391	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	232	234	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	227	228	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	435	first strand
Strand 2	A	441	445	anti-parallel
Strand 3	A	448	451	anti-parallel
Strand 4	A	476	479	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	467	470	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	175	177	anti-parallel
Strand 3	B	160	164	anti-parallel
Strand 4	B	125	131	parallel
Strand 5	B	268	273	parallel
Strand 6	B	31	37	parallel
Strand 7	B	323	329	parallel
Strand 8	B	372	375	anti-parallel
Strand 9	B	66	68	anti-parallel
Strand 10	B	384	386	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	390	391	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	232	234	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	227	228	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	435	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	448	451	anti-parallel
Strand 4	B	476	479	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	467	470	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S85

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S85