Analysis of interatomic Contacts of Structural Units in PDB entry:
9S86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S86 entry

There are 8 chains in PDB entry 9S86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	MET 661
A	PHE 663	VAL 813
B	SER 13	MET 661
B	PHE 663	VAL 813
C	SER 13	MET 661
C	PHE 663	VAL 813
D	SER 13	MET 661
D	PHE 663	VAL 813

There are163 helices in PDB entry 9S86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	27	Right-handed alpha
Helix 2	AA2	A	37	66	Right-handed alpha
Helix 3	AA3	A	84	93	Right-handed alpha
Helix 4	AA4	A	94	105	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	124	141	Right-handed alpha
Helix 7	AA7	A	252	256	Right-handed 310
Helix 8	AA8	A	261	267	Right-handed 310
Helix 9	AA9	A	278	306	Right-handed alpha
Helix 10	AB1	A	322	325	Right-handed 310
Helix 11	AB2	A	326	340	Right-handed alpha
Helix 12	AB3	A	342	353	Right-handed alpha
Helix 13	AB4	A	371	376	Right-handed alpha
Helix 14	AB5	A	378	400	Right-handed alpha
Helix 15	AB6	A	403	411	Right-handed alpha
Helix 16	AB7	A	423	431	Right-handed alpha
Helix 17	AB8	A	438	448	Right-handed alpha
Helix 18	AB9	A	450	457	Right-handed alpha
Helix 19	AC1	A	469	474	Right-handed alpha
Helix 20	AC2	A	478	490	Right-handed alpha
Helix 21	AC3	A	491	495	Right-handed 310
Helix 22	AC4	A	496	500	Right-handed 310
Helix 23	AC5	A	501	506	Right-handed alpha
Helix 24	AC6	A	512	536	Right-handed alpha
Helix 25	AC7	A	553	557	Right-handed 310
Helix 26	AC8	A	558	575	Right-handed alpha
Helix 27	AC9	A	595	615	Right-handed alpha
Helix 28	AD1	A	631	642	Right-handed alpha
Helix 29	AD2	A	658	666	Right-handed alpha
Helix 30	AD3	A	676	686	Right-handed alpha
Helix 31	AD4	A	696	707	Right-handed alpha
Helix 32	AD5	A	709	717	Right-handed alpha
Helix 33	AD6	A	718	729	Right-handed alpha
Helix 34	AD7	A	740	750	Right-handed alpha
Helix 35	AD8	A	759	776	Right-handed alpha
Helix 36	AD9	A	776	790	Right-handed alpha
Helix 37	AE1	A	791	794	Right-handed 310
Helix 38	AE2	A	795	807	Right-handed alpha
Helix 39	AE3	B	14	27	Right-handed alpha
Helix 40	AE4	B	37	68	Right-handed alpha
Helix 41	AE5	B	84	93	Right-handed alpha
Helix 42	AE6	B	94	105	Right-handed alpha
Helix 43	AE7	B	108	114	Right-handed alpha
Helix 44	AE8	B	124	141	Right-handed alpha
Helix 45	AE9	B	251	257	Right-handed alpha
Helix 46	AF1	B	258	267	Right-handed 310
Helix 47	AF2	B	277	303	Right-handed alpha
Helix 48	AF3	B	310	313	Right-handed 310
Helix 49	AF4	B	322	325	Right-handed 310
Helix 50	AF5	B	326	339	Right-handed alpha
Helix 51	AF6	B	342	351	Right-handed alpha
Helix 52	AF7	B	371	378	Right-handed alpha
Helix 53	AF8	B	378	400	Right-handed alpha
Helix 54	AF9	B	405	409	Right-handed 310
Helix 55	AG1	B	423	431	Right-handed alpha
Helix 56	AG2	B	438	448	Right-handed alpha
Helix 57	AG3	B	450	457	Right-handed alpha
Helix 58	AG4	B	469	474	Right-handed alpha
Helix 59	AG5	B	478	490	Right-handed alpha
Helix 60	AG6	B	491	495	Right-handed 310
Helix 61	AG7	B	496	504	Right-handed 310
Helix 62	AG8	B	510	536	Right-handed alpha
Helix 63	AG9	B	553	557	Right-handed 310
Helix 64	AH1	B	558	575	Right-handed alpha
Helix 65	AH2	B	595	613	Right-handed alpha
Helix 66	AH3	B	618	622	Right-handed 310
Helix 67	AH4	B	631	642	Right-handed alpha
Helix 68	AH5	B	657	666	Right-handed alpha
Helix 69	AH6	B	676	686	Right-handed alpha
Helix 70	AH7	B	687	690	Right-handed 310
Helix 71	AH8	B	696	707	Right-handed alpha
Helix 72	AH9	B	710	717	Right-handed alpha
Helix 73	AI1	B	717	730	Right-handed alpha
Helix 74	AI2	B	740	749	Right-handed alpha
Helix 75	AI3	B	759	775	Right-handed alpha
Helix 76	AI4	B	776	791	Right-handed alpha
Helix 77	AI5	B	792	794	Right-handed 310
Helix 78	AI6	B	795	807	Right-handed alpha
Helix 79	AI7	C	14	27	Right-handed alpha
Helix 80	AI8	C	37	68	Right-handed alpha
Helix 81	AI9	C	84	93	Right-handed alpha
Helix 82	AJ1	C	94	105	Right-handed alpha
Helix 83	AJ2	C	108	114	Right-handed alpha
Helix 84	AJ3	C	124	141	Right-handed alpha
Helix 85	AJ4	C	242	246	Right-handed 310
Helix 86	AJ5	C	251	257	Right-handed alpha
Helix 87	AJ6	C	258	267	Right-handed 310
Helix 88	AJ7	C	275	277	Right-handed 310
Helix 89	AJ8	C	278	303	Right-handed alpha
Helix 90	AJ9	C	310	313	Right-handed 310
Helix 91	AK1	C	323	325	Right-handed 310
Helix 92	AK2	C	326	340	Right-handed alpha
Helix 93	AK3	C	342	351	Right-handed alpha
Helix 94	AK4	C	371	378	Right-handed alpha
Helix 95	AK5	C	378	400	Right-handed alpha
Helix 96	AK6	C	403	411	Right-handed alpha
Helix 97	AK7	C	415	418	Right-handed 310
Helix 98	AK8	C	423	431	Right-handed alpha
Helix 99	AK9	C	438	448	Right-handed alpha
Helix 100	AL1	C	450	457	Right-handed alpha
Helix 101	AL2	C	469	474	Right-handed alpha
Helix 102	AL3	C	478	490	Right-handed alpha
Helix 103	AL4	C	491	495	Right-handed 310
Helix 104	AL5	C	496	506	Right-handed 310
Helix 105	AL6	C	510	536	Right-handed alpha
Helix 106	AL7	C	553	557	Right-handed 310
Helix 107	AL8	C	558	575	Right-handed alpha
Helix 108	AL9	C	595	615	Right-handed alpha
Helix 109	AM1	C	618	620	Right-handed 310
Helix 110	AM2	C	631	642	Right-handed alpha
Helix 111	AM3	C	657	666	Right-handed alpha
Helix 112	AM4	C	676	686	Right-handed alpha
Helix 113	AM5	C	687	690	Right-handed 310
Helix 114	AM6	C	696	707	Right-handed alpha
Helix 115	AM7	C	709	717	Right-handed alpha
Helix 116	AM8	C	718	729	Right-handed alpha
Helix 117	AM9	C	740	750	Right-handed alpha
Helix 118	AN1	C	759	775	Right-handed alpha
Helix 119	AN2	C	776	790	Right-handed alpha
Helix 120	AN3	C	791	794	Right-handed 310
Helix 121	AN4	C	795	807	Right-handed alpha
Helix 122	AN5	D	14	27	Right-handed alpha
Helix 123	AN6	D	32	36	Right-handed 310
Helix 124	AN7	D	37	42	Right-handed alpha
Helix 125	AN8	D	42	68	Right-handed alpha
Helix 126	AN9	D	84	93	Right-handed alpha
Helix 127	AO1	D	94	105	Right-handed alpha
Helix 128	AO2	D	108	116	Right-handed alpha
Helix 129	AO3	D	124	141	Right-handed alpha
Helix 130	AO4	D	251	257	Right-handed alpha
Helix 131	AO5	D	258	267	Right-handed 310
Helix 132	AO6	D	275	306	Right-handed alpha
Helix 133	AO7	D	310	313	Right-handed 310
Helix 134	AO8	D	323	325	Right-handed 310
Helix 135	AO9	D	326	338	Right-handed alpha
Helix 136	AP1	D	342	353	Right-handed alpha
Helix 137	AP2	D	362	366	Right-handed 310
Helix 138	AP3	D	371	376	Right-handed alpha
Helix 139	AP4	D	378	400	Right-handed alpha
Helix 140	AP5	D	403	411	Right-handed alpha
Helix 141	AP6	D	415	418	Right-handed 310
Helix 142	AP7	D	423	431	Right-handed alpha
Helix 143	AP8	D	438	448	Right-handed alpha
Helix 144	AP9	D	450	457	Right-handed alpha
Helix 145	AQ1	D	469	474	Right-handed alpha
Helix 146	AQ2	D	478	490	Right-handed alpha
Helix 147	AQ3	D	491	495	Right-handed 310
Helix 148	AQ4	D	496	504	Right-handed 310
Helix 149	AQ5	D	511	536	Right-handed alpha
Helix 150	AQ6	D	553	556	Right-handed 310
Helix 151	AQ7	D	557	575	Right-handed alpha
Helix 152	AQ8	D	595	615	Right-handed alpha
Helix 153	AQ9	D	631	642	Right-handed alpha
Helix 154	AR1	D	658	666	Right-handed alpha
Helix 155	AR2	D	676	686	Right-handed alpha
Helix 156	AR3	D	696	707	Right-handed alpha
Helix 157	AR4	D	709	717	Right-handed alpha
Helix 158	AR5	D	718	729	Right-handed alpha
Helix 159	AR6	D	740	750	Right-handed alpha
Helix 160	AR7	D	755	775	Right-handed alpha
Helix 161	AR8	D	776	790	Right-handed alpha
Helix 162	AR9	D	791	794	Right-handed 310
Helix 163	AS1	D	795	807	Right-handed alpha

There are 24 sheets in PDB entry 9S86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	192	first strand
Strand 2	A	209	217	anti-parallel
Strand 3	A	228	236	anti-parallel
Strand 4	A	220	221	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	192	first strand
Strand 2	A	209	217	anti-parallel
Strand 3	A	228	236	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	71	75	parallel
Strand 6	A	315	318	parallel
Strand 7	A	354	357	parallel
Strand 8	A	433	435	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	164	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	202	206	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	A	413	414	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	627	first strand
Strand 2	A	583	588	parallel
Strand 3	A	544	549	parallel
Strand 4	A	644	647	parallel
Strand 5	A	669	673	parallel
Strand 6	A	691	693	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	190	first strand
Strand 2	B	211	220	anti-parallel
Strand 3	B	229	238	anti-parallel
Strand 4	B	144	149	parallel
Strand 5	B	71	75	parallel
Strand 6	B	315	318	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	164	168	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	199	first strand
Strand 2	B	202	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	357	first strand
Strand 2	B	433	436	parallel
Strand 3	B	461	463	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	B	413	414	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	626	first strand
Strand 2	B	584	587	parallel
Strand 3	B	545	547	parallel
Strand 4	B	644	647	parallel
Strand 5	B	669	673	parallel
Strand 6	B	691	693	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	238	first strand
Strand 2	C	144	149	parallel
Strand 3	C	71	75	parallel
Strand 4	C	315	318	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	166	168	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	192	first strand
Strand 2	C	209	220	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	198	first strand
Strand 2	C	203	206	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	358	first strand
Strand 2	C	433	436	parallel
Strand 3	C	461	463	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	413	414	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	622	626	first strand
Strand 2	C	583	587	parallel
Strand 3	C	544	547	parallel
Strand 4	C	644	647	parallel
Strand 5	C	669	673	parallel
Strand 6	C	691	693	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	192	first strand
Strand 2	D	209	221	anti-parallel
Strand 3	D	228	238	anti-parallel
Strand 4	D	144	149	parallel
Strand 5	D	71	75	parallel
Strand 6	D	315	318	parallel
Strand 7	D	354	357	parallel
Strand 8	D	433	436	parallel
Strand 9	D	461	463	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	161	first strand
Strand 2	D	164	168	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	199	first strand
Strand 2	D	202	206	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	370	first strand
Strand 2	D	420	422	anti-parallel
Strand 3	D	413	414	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	622	626	first strand
Strand 2	D	583	588	parallel
Strand 3	D	544	549	parallel
Strand 4	D	644	647	parallel
Strand 5	D	669	673	parallel
Strand 6	D	691	693	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S86

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S86