Analysis of interatomic Contacts of Structural Units in PDB entry:
9S88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S88 entry

There are 5 chains in PDB entry 9S88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 25	SER 512
B	VAL 26	SER 512
C	VAL 26	GLU 513
D	VAL 26	ASP 520
E	THR 25	GLU 513

There are 95 helices in PDB entry 9S88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	49	Right-handed 310
Helix 2	AA2	A	55	64	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	90	94	Right-handed 310
Helix 5	AA5	A	114	122	Right-handed alpha
Helix 6	AA6	A	152	157	Right-handed 310
Helix 7	AA7	A	207	211	Right-handed 310
Helix 8	AA8	A	236	240	Right-handed 310
Helix 9	AA9	A	242	244	Right-handed 310
Helix 10	AB1	A	245	264	Right-handed alpha
Helix 11	AB2	A	284	288	Right-handed 310
Helix 12	AB3	A	293	317	Right-handed alpha
Helix 13	AB4	A	319	321	Right-handed 310
Helix 14	AB5	A	344	348	Right-handed 310
Helix 15	AB6	A	364	368	Right-handed 310
Helix 16	AB7	A	394	404	Right-handed alpha
Helix 17	AB8	A	417	422	Right-handed alpha
Helix 18	AB9	A	490	493	Right-handed 310
Helix 19	AC1	A	494	511	Right-handed alpha
Helix 20	AC2	B	45	49	Right-handed 310
Helix 21	AC3	B	55	64	Right-handed alpha
Helix 22	AC4	B	77	88	Right-handed alpha
Helix 23	AC5	B	90	94	Right-handed 310
Helix 24	AC6	B	114	122	Right-handed alpha
Helix 25	AC7	B	152	157	Right-handed 310
Helix 26	AC8	B	207	211	Right-handed 310
Helix 27	AC9	B	236	240	Right-handed 310
Helix 28	AD1	B	242	244	Right-handed 310
Helix 29	AD2	B	245	264	Right-handed alpha
Helix 30	AD3	B	284	288	Right-handed 310
Helix 31	AD4	B	293	317	Right-handed alpha
Helix 32	AD5	B	319	321	Right-handed 310
Helix 33	AD6	B	344	348	Right-handed 310
Helix 34	AD7	B	364	368	Right-handed 310
Helix 35	AD8	B	394	404	Right-handed alpha
Helix 36	AD9	B	417	422	Right-handed alpha
Helix 37	AE1	B	490	493	Right-handed 310
Helix 38	AE2	B	494	511	Right-handed alpha
Helix 39	AE3	C	45	49	Right-handed 310
Helix 40	AE4	C	55	64	Right-handed alpha
Helix 41	AE5	C	77	88	Right-handed alpha
Helix 42	AE6	C	90	94	Right-handed 310
Helix 43	AE7	C	114	122	Right-handed alpha
Helix 44	AE8	C	152	157	Right-handed 310
Helix 45	AE9	C	207	211	Right-handed 310
Helix 46	AF1	C	236	240	Right-handed 310
Helix 47	AF2	C	242	244	Right-handed 310
Helix 48	AF3	C	245	264	Right-handed alpha
Helix 49	AF4	C	284	288	Right-handed 310
Helix 50	AF5	C	293	317	Right-handed alpha
Helix 51	AF6	C	319	321	Right-handed 310
Helix 52	AF7	C	344	348	Right-handed 310
Helix 53	AF8	C	364	368	Right-handed 310
Helix 54	AF9	C	394	404	Right-handed alpha
Helix 55	AG1	C	417	422	Right-handed alpha
Helix 56	AG2	C	490	493	Right-handed 310
Helix 57	AG3	C	494	511	Right-handed alpha
Helix 58	AG4	D	45	49	Right-handed 310
Helix 59	AG5	D	55	64	Right-handed alpha
Helix 60	AG6	D	77	88	Right-handed alpha
Helix 61	AG7	D	90	94	Right-handed 310
Helix 62	AG8	D	114	122	Right-handed alpha
Helix 63	AG9	D	152	157	Right-handed 310
Helix 64	AH1	D	207	211	Right-handed 310
Helix 65	AH2	D	236	240	Right-handed 310
Helix 66	AH3	D	242	244	Right-handed 310
Helix 67	AH4	D	245	264	Right-handed alpha
Helix 68	AH5	D	284	288	Right-handed 310
Helix 69	AH6	D	293	317	Right-handed alpha
Helix 70	AH7	D	319	321	Right-handed 310
Helix 71	AH8	D	344	348	Right-handed 310
Helix 72	AH9	D	364	368	Right-handed 310
Helix 73	AI1	D	394	404	Right-handed alpha
Helix 74	AI2	D	417	422	Right-handed alpha
Helix 75	AI3	D	490	493	Right-handed 310
Helix 76	AI4	D	494	511	Right-handed alpha
Helix 77	AI5	E	45	49	Right-handed 310
Helix 78	AI6	E	55	64	Right-handed alpha
Helix 79	AI7	E	77	88	Right-handed alpha
Helix 80	AI8	E	90	94	Right-handed 310
Helix 81	AI9	E	114	122	Right-handed alpha
Helix 82	AJ1	E	152	157	Right-handed 310
Helix 83	AJ2	E	207	211	Right-handed 310
Helix 84	AJ3	E	236	240	Right-handed 310
Helix 85	AJ4	E	242	244	Right-handed 310
Helix 86	AJ5	E	245	264	Right-handed alpha
Helix 87	AJ6	E	284	288	Right-handed 310
Helix 88	AJ7	E	293	317	Right-handed alpha
Helix 89	AJ8	E	319	321	Right-handed 310
Helix 90	AJ9	E	344	348	Right-handed 310
Helix 91	AK1	E	364	368	Right-handed 310
Helix 92	AK2	E	394	404	Right-handed alpha
Helix 93	AK3	E	417	422	Right-handed alpha
Helix 94	AK4	E	490	493	Right-handed 310
Helix 95	AK5	E	494	511	Right-handed alpha

There are 30 sheets in PDB entry 9S88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	175	177	anti-parallel
Strand 3	A	160	164	anti-parallel
Strand 4	A	125	131	parallel
Strand 5	A	268	273	parallel
Strand 6	A	31	37	parallel
Strand 7	A	323	329	parallel
Strand 8	A	373	375	anti-parallel
Strand 9	A	66	68	anti-parallel
Strand 10	A	384	386	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	390	391	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	232	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	435	first strand
Strand 2	A	441	445	anti-parallel
Strand 3	A	448	451	anti-parallel
Strand 4	A	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	467	470	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	175	177	anti-parallel
Strand 3	B	160	164	anti-parallel
Strand 4	B	125	131	parallel
Strand 5	B	268	273	parallel
Strand 6	B	31	37	parallel
Strand 7	B	323	329	parallel
Strand 8	B	372	375	anti-parallel
Strand 9	B	66	68	anti-parallel
Strand 10	B	384	386	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	390	391	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	232	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	435	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	448	451	anti-parallel
Strand 4	B	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	459	first strand
Strand 2	B	467	470	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	176	177	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	125	131	parallel
Strand 5	C	268	273	parallel
Strand 6	C	31	37	parallel
Strand 7	C	323	329	parallel
Strand 8	C	372	375	anti-parallel
Strand 9	C	66	68	anti-parallel
Strand 10	C	384	386	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	390	391	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	232	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	435	first strand
Strand 2	C	441	445	anti-parallel
Strand 3	C	448	451	anti-parallel
Strand 4	C	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	459	first strand
Strand 2	C	467	470	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	181	first strand
Strand 2	D	175	177	anti-parallel
Strand 3	D	160	164	anti-parallel
Strand 4	D	125	131	parallel
Strand 5	D	268	273	parallel
Strand 6	D	31	37	parallel
Strand 7	D	323	329	parallel
Strand 8	D	372	375	anti-parallel
Strand 9	D	66	68	anti-parallel
Strand 10	D	384	386	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	390	391	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	232	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	224	first strand
Strand 2	D	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	435	first strand
Strand 2	D	441	445	anti-parallel
Strand 3	D	448	451	anti-parallel
Strand 4	D	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	456	459	first strand
Strand 2	D	467	470	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	181	first strand
Strand 2	E	176	177	anti-parallel
Strand 3	E	160	164	anti-parallel
Strand 4	E	125	131	parallel
Strand 5	E	268	273	parallel
Strand 6	E	31	37	parallel
Strand 7	E	323	329	parallel
Strand 8	E	372	375	anti-parallel
Strand 9	E	66	68	anti-parallel
Strand 10	E	384	386	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	390	391	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	193	first strand
Strand 2	E	232	234	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	224	first strand
Strand 2	E	227	228	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	431	435	first strand
Strand 2	E	441	445	anti-parallel
Strand 3	E	448	451	anti-parallel
Strand 4	E	476	479	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	456	459	first strand
Strand 2	E	467	470	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S88

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S88