Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S8A entry

There are 2 chains in PDB entry 9S8A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 35	GLY 715
B	SER 35	VAL 609

There are 49 helices in PDB entry 9S8A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	57	Right-handed 310
Helix 2	AA2	A	58	63	Right-handed 310
Helix 3	AA3	A	74	83	Right-handed alpha
Helix 4	AA4	A	96	107	Right-handed alpha
Helix 5	AA5	A	130	138	Right-handed alpha
Helix 6	AA6	A	163	167	Right-handed 310
Helix 7	AA7	A	178	183	Right-handed 310
Helix 8	AA8	A	185	189	Right-handed 310
Helix 9	AA9	A	208	211	Right-handed 310
Helix 10	AB1	A	216	240	Right-handed alpha
Helix 11	AB2	A	286	289	Right-handed 310
Helix 12	AB3	A	301	305	Right-handed 310
Helix 13	AB4	A	309	336	Right-handed alpha
Helix 14	AB5	A	338	340	Right-handed 310
Helix 15	AB6	A	359	363	Right-handed 310
Helix 16	AB7	A	386	391	Right-handed alpha
Helix 17	AB8	A	415	425	Right-handed alpha
Helix 18	AB9	A	438	443	Right-handed alpha
Helix 19	AC1	A	445	449	Right-handed 310
Helix 20	AC2	A	519	522	Right-handed 310
Helix 21	AC3	A	523	537	Right-handed alpha
Helix 22	AC4	A	541	545	Right-handed 310
Helix 23	AC5	A	580	584	Right-handed 310
Helix 24	AC6	A	687	691	Right-handed 310
Helix 25	AC7	A	708	710	Right-handed 310
Helix 26	AC8	B	48	57	Right-handed 310
Helix 27	AC9	B	58	63	Right-handed 310
Helix 28	AD1	B	74	83	Right-handed alpha
Helix 29	AD2	B	96	107	Right-handed alpha
Helix 30	AD3	B	130	138	Right-handed alpha
Helix 31	AD4	B	163	167	Right-handed 310
Helix 32	AD5	B	178	183	Right-handed 310
Helix 33	AD6	B	185	189	Right-handed 310
Helix 34	AD7	B	208	211	Right-handed 310
Helix 35	AD8	B	216	240	Right-handed alpha
Helix 36	AD9	B	286	289	Right-handed 310
Helix 37	AE1	B	301	305	Right-handed 310
Helix 38	AE2	B	309	336	Right-handed alpha
Helix 39	AE3	B	359	363	Right-handed 310
Helix 40	AE4	B	386	391	Right-handed alpha
Helix 41	AE5	B	415	425	Right-handed alpha
Helix 42	AE6	B	438	443	Right-handed alpha
Helix 43	AE7	B	445	449	Right-handed 310
Helix 44	AE8	B	519	522	Right-handed 310
Helix 45	AE9	B	523	537	Right-handed alpha
Helix 46	AF1	B	541	545	Right-handed 310
Helix 47	AF2	B	580	584	Right-handed 310
Helix 48	AF3	B	687	691	Right-handed 310
Helix 49	AF4	B	708	710	Right-handed 310

There are 16 sheets in PDB entry 9S8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	193	196	anti-parallel
Strand 3	A	171	175	anti-parallel
Strand 4	A	141	147	parallel
Strand 5	A	243	248	parallel
Strand 6	A	38	44	parallel
Strand 7	A	342	348	parallel
Strand 8	A	394	397	anti-parallel
Strand 9	A	85	87	anti-parallel
Strand 10	A	406	408	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	412	413	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	278	first strand
Strand 2	A	281	284	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	463	first strand
Strand 2	A	478	487	anti-parallel
Strand 3	A	490	494	anti-parallel
Strand 4	A	505	507	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	712	714	anti-parallel
Strand 3	A	607	617	anti-parallel
Strand 4	A	566	571	anti-parallel
Strand 5	A	590	594	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	712	714	anti-parallel
Strand 3	A	607	617	anti-parallel
Strand 4	A	675	685	anti-parallel
Strand 5	A	636	641	anti-parallel
Strand 6	A	644	649	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	660	first strand
Strand 2	A	621	629	anti-parallel
Strand 3	A	670	672	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	660	first strand
Strand 2	A	621	629	anti-parallel
Strand 3	A	693	699	anti-parallel
Strand 4	A	702	706	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	193	196	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	141	147	parallel
Strand 5	B	243	248	parallel
Strand 6	B	38	44	parallel
Strand 7	B	342	348	parallel
Strand 8	B	395	397	anti-parallel
Strand 9	B	85	87	anti-parallel
Strand 10	B	406	408	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	412	413	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	281	284	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	463	first strand
Strand 2	B	478	487	anti-parallel
Strand 3	B	490	494	anti-parallel
Strand 4	B	505	507	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	712	714	anti-parallel
Strand 3	B	607	617	anti-parallel
Strand 4	B	566	572	anti-parallel
Strand 5	B	590	594	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	712	714	anti-parallel
Strand 3	B	607	617	anti-parallel
Strand 4	B	675	685	anti-parallel
Strand 5	B	636	641	anti-parallel
Strand 6	B	644	649	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	660	first strand
Strand 2	B	621	629	anti-parallel
Strand 3	B	670	672	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	660	first strand
Strand 2	B	621	629	anti-parallel
Strand 3	B	693	699	anti-parallel
Strand 4	B	702	706	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S8A

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8A