Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S8B entry

There are 7 chains in PDB entry 9S8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12MET 661
A
 PHE 663VAL 813
B
 SER 13MET 661
B
 PHE 663VAL 813
C
 MET 1LEU 14
C
 THR 16GLU 85
D
 MET 1LEU 84
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 9S8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
32 36Right-handed 310
Helix 3
AA3
A
37 68Right-handed alpha
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
94 105Right-handed alpha
Helix 6
AA6
A
108 116Right-handed alpha
Helix 7
AA7
A
124 141Right-handed alpha
Helix 8
AA8
A
241 246Right-handed 310
Helix 9
AA9
A
251 257Right-handed alpha
Helix 10
AB1
A
261 267Right-handed 310
Helix 11
AB2
A
275 306Right-handed alpha
Helix 12
AB3
A
322 325Right-handed 310
Helix 13
AB4
A
326 340Right-handed alpha
Helix 14
AB5
A
342 353Right-handed alpha
Helix 15
AB6
A
362 366Right-handed 310
Helix 16
AB7
A
371 378Right-handed alpha
Helix 17
AB8
A
378 400Right-handed alpha
Helix 18
AB9
A
403 411Right-handed alpha
Helix 19
AC1
A
423 431Right-handed alpha
Helix 20
AC2
A
438 448Right-handed alpha
Helix 21
AC3
A
450 457Right-handed alpha
Helix 22
AC4
A
469 475Right-handed alpha
Helix 23
AC5
A
478 490Right-handed alpha
Helix 24
AC6
A
491 495Right-handed 310
Helix 25
AC7
A
496 499Right-handed 310
Helix 26
AC8
A
500 507Right-handed alpha
Helix 27
AC9
A
509 536Right-handed alpha
Helix 28
AD1
A
553 556Right-handed 310
Helix 29
AD2
A
557 575Right-handed alpha
Helix 30
AD3
A
595 614Right-handed alpha
Helix 31
AD4
A
618 620Right-handed 310
Helix 32
AD5
A
631 639Right-handed alpha
Helix 33
AD6
A
640 642Right-handed 310
Helix 34
AD7
A
657 667Right-handed alpha
Helix 35
AD8
A
677 686Right-handed alpha
Helix 36
AD9
A
696 707Right-handed alpha
Helix 37
AE1
A
709 716Right-handed alpha
Helix 38
AE2
A
717 729Right-handed alpha
Helix 39
AE3
A
740 749Right-handed alpha
Helix 40
AE4
A
759 775Right-handed alpha
Helix 41
AE5
A
776 790Right-handed alpha
Helix 42
AE6
A
791 794Right-handed 310
Helix 43
AE7
A
795 807Right-handed alpha
Helix 44
AE8
B
14 28Right-handed alpha
Helix 45
AE9
B
37 68Right-handed alpha
Helix 46
AF1
B
84 93Right-handed alpha
Helix 47
AF2
B
94 105Right-handed alpha
Helix 48
AF3
B
108 115Right-handed alpha
Helix 49
AF4
B
124 141Right-handed alpha
Helix 50
AF5
B
241 246Right-handed 310
Helix 51
AF6
B
261 267Right-handed 310
Helix 52
AF7
B
275 306Right-handed alpha
Helix 53
AF8
B
322 325Right-handed 310
Helix 54
AF9
B
326 340Right-handed alpha
Helix 55
AG1
B
342 353Right-handed alpha
Helix 56
AG2
B
362 366Right-handed 310
Helix 57
AG3
B
371 378Right-handed alpha
Helix 58
AG4
B
378 400Right-handed alpha
Helix 59
AG5
B
404 411Right-handed alpha
Helix 60
AG6
B
423 431Right-handed alpha
Helix 61
AG7
B
438 448Right-handed alpha
Helix 62
AG8
B
450 457Right-handed alpha
Helix 63
AG9
B
469 475Right-handed alpha
Helix 64
AH1
B
478 490Right-handed alpha
Helix 65
AH2
B
496 500Right-handed 310
Helix 66
AH3
B
501 506Right-handed alpha
Helix 67
AH4
B
509 536Right-handed alpha
Helix 68
AH5
B
557 575Right-handed alpha
Helix 69
AH6
B
595 614Right-handed alpha
Helix 70
AH7
B
618 620Right-handed 310
Helix 71
AH8
B
631 639Right-handed alpha
Helix 72
AH9
B
640 642Right-handed 310
Helix 73
AI1
B
658 667Right-handed alpha
Helix 74
AI2
B
676 686Right-handed alpha
Helix 75
AI3
B
696 707Right-handed alpha
Helix 76
AI4
B
709 717Right-handed alpha
Helix 77
AI5
B
717 729Right-handed alpha
Helix 78
AI6
B
740 749Right-handed alpha
Helix 79
AI7
B
759 775Right-handed alpha
Helix 80
AI8
B
776 790Right-handed alpha
Helix 81
AI9
B
791 794Right-handed 310
Helix 82
AJ1
B
795 807Right-handed alpha
Helix 83
AJ2
C
16 25Right-handed alpha
Helix 84
AJ3
C
46 52Right-handed alpha
Helix 85
AJ4
C
71 84Right-handed alpha
Helix 86
AJ5
D
15 27Right-handed alpha
Helix 87
AJ6
D
46 51Right-handed alpha
Helix 88
AJ7
D
71 84Right-handed alpha
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There are 12 sheets in PDB entry 9S8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 192first strand
Strand 2
A
209 220anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
144 149parallel
Strand 5
A
71 75parallel
Strand 6
A
315 320parallel
Strand 7
A
354 357parallel
Strand 8
A
434 436parallel
Strand 9
A
461 463parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
164 168anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
202 206anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
420 422anti-parallel
Strand 3
A
413 414anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 626first strand
Strand 2
A
583 588parallel
Strand 3
A
546 549parallel
Strand 4
A
644 647parallel
Strand 5
A
669 672parallel
Strand 6
A
691 692parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 192first strand
Strand 2
B
209 221anti-parallel
Strand 3
B
228 238anti-parallel
Strand 4
B
144 149parallel
Strand 5
B
71 75parallel
Strand 6
B
315 320parallel
Strand 7
B
354 357parallel
Strand 8
B
433 436parallel
Strand 9
B
461 463parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 161first strand
Strand 2
B
164 168anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 199first strand
Strand 2
B
202 206anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
420 422anti-parallel
Strand 3
B
413 414anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 626first strand
Strand 2
B
583 588parallel
Strand 3
B
544 549parallel
Strand 4
B
644 647parallel
Strand 5
B
669 672parallel
Strand 6
B
691 692parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 43first strand
Strand 2
C
32 37anti-parallel
Strand 3
C
61 66anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 7first strand
Strand 2
D
60 66anti-parallel
Strand 3
D
32 37anti-parallel
Strand 4
D
40 43anti-parallel
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