Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S8F entry

There is 1 chain in PDB entry 9S8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31LEU 562
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9S8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 73Right-handed alpha
Helix 2
AA2
A
75 85Right-handed alpha
Helix 3
AA3
A
96 107Right-handed alpha
Helix 4
AA4
A
109 114Right-handed alpha
Helix 5
AA5
A
177 184Right-handed alpha
Helix 6
AA6
A
202 211Right-handed 310
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
247 252Right-handed alpha
Helix 9
AA9
A
254 272Right-handed alpha
Helix 10
AB1
A
275 279Right-handed 310
Helix 11
AB2
A
295 299Right-handed 310
Helix 12
AB3
A
303 307Right-handed 310
Helix 13
AB4
A
317 344Right-handed alpha
Helix 14
AB5
A
367 372Right-handed alpha
Helix 15
AB6
A
384 388Right-handed alpha
Helix 16
AB7
A
414 423Right-handed alpha
Helix 17
AB8
A
439 444Right-handed alpha
Helix 18
AB9
A
462 466Right-handed 310
Helix 19
AC1
A
469 473Right-handed 310
Helix 20
AC2
A
513 531Right-handed alpha
Helix 21
AC3
A
554 560Right-handed alpha
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There are 6 sheets in PDB entry 9S8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
188 193parallel
Strand 3
A
281 286parallel
Strand 4
A
38 44parallel
Strand 5
A
350 356parallel
Strand 6
A
389 395anti-parallel
Strand 7
A
86 92anti-parallel
Strand 8
A
404 406parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
188 193parallel
Strand 3
A
281 286parallel
Strand 4
A
38 44parallel
Strand 5
A
350 356parallel
Strand 6
A
389 395anti-parallel
Strand 7
A
86 92anti-parallel
Strand 8
A
410 411parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
537 538anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
173 175parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
163 167anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 458first strand
Strand 2
A
475 480anti-parallel
Strand 3
A
483 488anti-parallel
Strand 4
A
494 498anti-parallel
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