Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S8I entry

There are 2 chains in PDB entry 9S8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15ALA 473
B
 ARG 13PHE 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9S8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 38Right-handed alpha
Helix 2
AA2
A
50 59Right-handed alpha
Helix 3
AA3
A
68 73Right-handed 310
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
104 111Right-handed alpha
Helix 6
AA6
A
112 115Right-handed 310
Helix 7
AA7
A
125 140Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
203 215Right-handed alpha
Helix 10
AB1
A
229 236Right-handed alpha
Helix 11
AB2
A
237 239Right-handed 310
Helix 12
AB3
A
286 303Right-handed alpha
Helix 13
AB4
A
306 316Right-handed alpha
Helix 14
AB5
A
346 361Right-handed alpha
Helix 15
AB6
A
374 381Right-handed alpha
Helix 16
AB7
A
381 390Right-handed alpha
Helix 17
AB8
A
412 422Right-handed alpha
Helix 18
AB9
A
436 442Right-handed alpha
Helix 19
AC1
A
443 445Right-handed 310
Helix 20
AC2
A
458 460Right-handed 310
Helix 21
AC3
A
461 468Right-handed alpha
Helix 22
AC4
A
469 473Right-handed 310
Helix 23
AC5
B
27 38Right-handed alpha
Helix 24
AC6
B
50 59Right-handed alpha
Helix 25
AC7
B
68 73Right-handed 310
Helix 26
AC8
B
88 97Right-handed alpha
Helix 27
AC9
B
104 111Right-handed alpha
Helix 28
AD1
B
112 115Right-handed 310
Helix 29
AD2
B
125 140Right-handed alpha
Helix 30
AD3
B
177 181Right-handed 310
Helix 31
AD4
B
203 215Right-handed alpha
Helix 32
AD5
B
229 236Right-handed alpha
Helix 33
AD6
B
237 239Right-handed 310
Helix 34
AD7
B
286 303Right-handed alpha
Helix 35
AD8
B
306 316Right-handed alpha
Helix 36
AD9
B
346 361Right-handed alpha
Helix 37
AE1
B
374 381Right-handed alpha
Helix 38
AE2
B
381 390Right-handed alpha
Helix 39
AE3
B
412 422Right-handed alpha
Helix 40
AE4
B
436 442Right-handed alpha
Helix 41
AE5
B
443 445Right-handed 310
Helix 42
AE6
B
458 460Right-handed 310
Helix 43
AE7
B
461 468Right-handed alpha
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There are 6 sheets in PDB entry 9S8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
41 46parallel
Strand 3
A
17 21parallel
Strand 4
A
77 80parallel
Strand 5
A
101 103parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
166 170parallel
Strand 4
A
116 121parallel
Strand 5
A
185 188parallel
Strand 6
A
222 226parallel
Strand 7
A
243 247parallel
Strand 8
A
254 262parallel
Strand 9
A
265 271anti-parallel
Strand 10
A
278 282anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 332first strand
Strand 2
A
335 342anti-parallel
Strand 3
A
450 454parallel
Strand 4
A
366 370parallel
Strand 5
A
394 398parallel
Strand 6
A
429 431parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
41 46parallel
Strand 3
B
17 21parallel
Strand 4
B
77 80parallel
Strand 5
B
101 103parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
145 148anti-parallel
Strand 3
B
166 170parallel
Strand 4
B
116 121parallel
Strand 5
B
185 188parallel
Strand 6
B
222 226parallel
Strand 7
B
243 247parallel
Strand 8
B
254 262parallel
Strand 9
B
265 271anti-parallel
Strand 10
B
278 282anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 332first strand
Strand 2
B
335 342anti-parallel
Strand 3
B
450 454parallel
Strand 4
B
366 370parallel
Strand 5
B
394 398parallel
Strand 6
B
429 431parallel
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