Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S8K entry

There are 15 chains in PDB entry 9S8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 10	MET 661
A	PHE 663	LEU 815
B	SER 13	MET 661
B	PHE 663	ASP 805
B	ILE 807	LEU 815
C	SER 13	MET 661
C	PHE 663	ASP 805
C	ILE 807	ARG 814
D	SER 13	MET 661
D	PHE 663	ASP 805
D	ILE 807	LEU 815
E	MET 1	GLU 85
F	MET 1	LEU 84
G	MET 1	GLU 83
H	MET 1	GLU 85

There are181 helices in PDB entry 9S8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	28	Right-handed alpha
Helix 2	AA2	A	37	68	Right-handed alpha
Helix 3	AA3	A	84	93	Right-handed alpha
Helix 4	AA4	A	94	105	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	124	141	Right-handed alpha
Helix 7	AA7	A	241	246	Right-handed 310
Helix 8	AA8	A	251	257	Right-handed alpha
Helix 9	AA9	A	261	267	Right-handed 310
Helix 10	AB1	A	275	306	Right-handed alpha
Helix 11	AB2	A	310	314	Right-handed alpha
Helix 12	AB3	A	322	325	Right-handed 310
Helix 13	AB4	A	326	340	Right-handed alpha
Helix 14	AB5	A	342	353	Right-handed alpha
Helix 15	AB6	A	362	366	Right-handed 310
Helix 16	AB7	A	371	378	Right-handed alpha
Helix 17	AB8	A	378	400	Right-handed alpha
Helix 18	AB9	A	404	411	Right-handed alpha
Helix 19	AC1	A	423	431	Right-handed alpha
Helix 20	AC2	A	438	448	Right-handed alpha
Helix 21	AC3	A	450	457	Right-handed alpha
Helix 22	AC4	A	469	475	Right-handed alpha
Helix 23	AC5	A	478	490	Right-handed alpha
Helix 24	AC6	A	491	495	Right-handed 310
Helix 25	AC7	A	496	500	Right-handed 310
Helix 26	AC8	A	501	506	Right-handed alpha
Helix 27	AC9	A	509	536	Right-handed alpha
Helix 28	AD1	A	553	556	Right-handed 310
Helix 29	AD2	A	557	575	Right-handed alpha
Helix 30	AD3	A	595	614	Right-handed alpha
Helix 31	AD4	A	631	639	Right-handed alpha
Helix 32	AD5	A	640	642	Right-handed 310
Helix 33	AD6	A	657	666	Right-handed alpha
Helix 34	AD7	A	677	686	Right-handed alpha
Helix 35	AD8	A	687	690	Right-handed 310
Helix 36	AD9	A	696	706	Right-handed alpha
Helix 37	AE1	A	709	717	Right-handed alpha
Helix 38	AE2	A	717	730	Right-handed alpha
Helix 39	AE3	A	740	749	Right-handed alpha
Helix 40	AE4	A	759	776	Right-handed alpha
Helix 41	AE5	A	776	790	Right-handed alpha
Helix 42	AE6	A	791	794	Right-handed 310
Helix 43	AE7	A	795	807	Right-handed alpha
Helix 44	AE8	B	14	28	Right-handed alpha
Helix 45	AE9	B	37	68	Right-handed alpha
Helix 46	AF1	B	84	93	Right-handed alpha
Helix 47	AF2	B	94	105	Right-handed alpha
Helix 48	AF3	B	108	114	Right-handed alpha
Helix 49	AF4	B	124	141	Right-handed alpha
Helix 50	AF5	B	241	246	Right-handed 310
Helix 51	AF6	B	251	256	Right-handed alpha
Helix 52	AF7	B	261	267	Right-handed 310
Helix 53	AF8	B	275	306	Right-handed alpha
Helix 54	AF9	B	310	314	Right-handed alpha
Helix 55	AG1	B	322	325	Right-handed 310
Helix 56	AG2	B	326	340	Right-handed alpha
Helix 57	AG3	B	342	353	Right-handed alpha
Helix 58	AG4	B	362	366	Right-handed 310
Helix 59	AG5	B	371	378	Right-handed alpha
Helix 60	AG6	B	378	400	Right-handed alpha
Helix 61	AG7	B	404	411	Right-handed alpha
Helix 62	AG8	B	423	431	Right-handed alpha
Helix 63	AG9	B	438	448	Right-handed alpha
Helix 64	AH1	B	450	457	Right-handed alpha
Helix 65	AH2	B	469	475	Right-handed alpha
Helix 66	AH3	B	478	490	Right-handed alpha
Helix 67	AH4	B	491	495	Right-handed 310
Helix 68	AH5	B	496	500	Right-handed 310
Helix 69	AH6	B	501	506	Right-handed alpha
Helix 70	AH7	B	509	536	Right-handed alpha
Helix 71	AH8	B	557	575	Right-handed alpha
Helix 72	AH9	B	595	614	Right-handed alpha
Helix 73	AI1	B	618	620	Right-handed 310
Helix 74	AI2	B	631	639	Right-handed alpha
Helix 75	AI3	B	640	642	Right-handed 310
Helix 76	AI4	B	658	666	Right-handed alpha
Helix 77	AI5	B	677	686	Right-handed alpha
Helix 78	AI6	B	696	707	Right-handed alpha
Helix 79	AI7	B	709	717	Right-handed alpha
Helix 80	AI8	B	717	729	Right-handed alpha
Helix 81	AI9	B	740	749	Right-handed alpha
Helix 82	AJ1	B	759	776	Right-handed alpha
Helix 83	AJ2	B	776	790	Right-handed alpha
Helix 84	AJ3	B	791	794	Right-handed 310
Helix 85	AJ4	B	795	807	Right-handed alpha
Helix 86	AJ5	C	14	28	Right-handed alpha
Helix 87	AJ6	C	37	68	Right-handed alpha
Helix 88	AJ7	C	84	93	Right-handed alpha
Helix 89	AJ8	C	94	104	Right-handed alpha
Helix 90	AJ9	C	108	116	Right-handed alpha
Helix 91	AK1	C	124	141	Right-handed alpha
Helix 92	AK2	C	241	246	Right-handed 310
Helix 93	AK3	C	251	256	Right-handed alpha
Helix 94	AK4	C	261	267	Right-handed 310
Helix 95	AK5	C	275	306	Right-handed alpha
Helix 96	AK6	C	322	325	Right-handed 310
Helix 97	AK7	C	326	338	Right-handed alpha
Helix 98	AK8	C	342	353	Right-handed alpha
Helix 99	AK9	C	362	366	Right-handed 310
Helix 100	AL1	C	371	378	Right-handed alpha
Helix 101	AL2	C	378	400	Right-handed alpha
Helix 102	AL3	C	404	411	Right-handed alpha
Helix 103	AL4	C	423	431	Right-handed alpha
Helix 104	AL5	C	438	448	Right-handed alpha
Helix 105	AL6	C	450	457	Right-handed alpha
Helix 106	AL7	C	469	476	Right-handed alpha
Helix 107	AL8	C	478	490	Right-handed alpha
Helix 108	AL9	C	491	495	Right-handed 310
Helix 109	AM1	C	496	499	Right-handed 310
Helix 110	AM2	C	500	505	Right-handed alpha
Helix 111	AM3	C	509	536	Right-handed alpha
Helix 112	AM4	C	557	575	Right-handed alpha
Helix 113	AM5	C	595	614	Right-handed alpha
Helix 114	AM6	C	618	620	Right-handed 310
Helix 115	AM7	C	631	639	Right-handed alpha
Helix 116	AM8	C	640	642	Right-handed 310
Helix 117	AM9	C	658	666	Right-handed alpha
Helix 118	AN1	C	677	686	Right-handed alpha
Helix 119	AN2	C	696	707	Right-handed alpha
Helix 120	AN3	C	709	717	Right-handed alpha
Helix 121	AN4	C	717	729	Right-handed alpha
Helix 122	AN5	C	740	749	Right-handed alpha
Helix 123	AN6	C	759	776	Right-handed alpha
Helix 124	AN7	C	776	789	Right-handed alpha
Helix 125	AN8	C	790	794	Right-handed 310
Helix 126	AN9	C	795	807	Right-handed alpha
Helix 127	AO1	D	14	28	Right-handed alpha
Helix 128	AO2	D	37	68	Right-handed alpha
Helix 129	AO3	D	84	93	Right-handed alpha
Helix 130	AO4	D	94	105	Right-handed alpha
Helix 131	AO5	D	108	116	Right-handed alpha
Helix 132	AO6	D	124	141	Right-handed alpha
Helix 133	AO7	D	241	246	Right-handed 310
Helix 134	AO8	D	251	256	Right-handed alpha
Helix 135	AO9	D	261	267	Right-handed 310
Helix 136	AP1	D	275	306	Right-handed alpha
Helix 137	AP2	D	310	314	Right-handed alpha
Helix 138	AP3	D	322	325	Right-handed 310
Helix 139	AP4	D	326	340	Right-handed alpha
Helix 140	AP5	D	342	353	Right-handed alpha
Helix 141	AP6	D	362	366	Right-handed 310
Helix 142	AP7	D	371	378	Right-handed alpha
Helix 143	AP8	D	378	400	Right-handed alpha
Helix 144	AP9	D	404	410	Right-handed alpha
Helix 145	AQ1	D	423	431	Right-handed alpha
Helix 146	AQ2	D	438	448	Right-handed alpha
Helix 147	AQ3	D	450	457	Right-handed alpha
Helix 148	AQ4	D	469	475	Right-handed alpha
Helix 149	AQ5	D	478	490	Right-handed alpha
Helix 150	AQ6	D	491	495	Right-handed 310
Helix 151	AQ7	D	496	500	Right-handed 310
Helix 152	AQ8	D	501	506	Right-handed alpha
Helix 153	AQ9	D	508	536	Right-handed alpha
Helix 154	AR1	D	553	556	Right-handed 310
Helix 155	AR2	D	557	575	Right-handed alpha
Helix 156	AR3	D	595	613	Right-handed alpha
Helix 157	AR4	D	618	620	Right-handed 310
Helix 158	AR5	D	631	639	Right-handed alpha
Helix 159	AR6	D	640	642	Right-handed 310
Helix 160	AR7	D	658	666	Right-handed alpha
Helix 161	AR8	D	677	686	Right-handed alpha
Helix 162	AR9	D	696	706	Right-handed alpha
Helix 163	AS1	D	709	717	Right-handed alpha
Helix 164	AS2	D	717	730	Right-handed alpha
Helix 165	AS3	D	740	749	Right-handed alpha
Helix 166	AS4	D	759	776	Right-handed alpha
Helix 167	AS5	D	776	790	Right-handed alpha
Helix 168	AS6	D	791	794	Right-handed 310
Helix 169	AS7	D	795	807	Right-handed alpha
Helix 170	AS8	E	15	28	Right-handed alpha
Helix 171	AS9	E	46	51	Right-handed alpha
Helix 172	AT1	E	71	84	Right-handed alpha
Helix 173	AT2	F	15	28	Right-handed alpha
Helix 174	AT3	F	46	51	Right-handed alpha
Helix 175	AT4	F	71	84	Right-handed alpha
Helix 176	AT5	G	15	27	Right-handed alpha
Helix 177	AT6	G	46	52	Right-handed alpha
Helix 178	AT7	G	69	83	Right-handed alpha
Helix 179	AT8	H	15	29	Right-handed alpha
Helix 180	AT9	H	46	52	Right-handed alpha
Helix 181	AU1	H	69	84	Right-handed alpha

There are 23 sheets in PDB entry 9S8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	192	first strand
Strand 2	A	209	221	anti-parallel
Strand 3	A	228	238	anti-parallel
Strand 4	A	144	149	parallel
Strand 5	A	71	75	parallel
Strand 6	A	315	320	parallel
Strand 7	A	354	357	parallel
Strand 8	A	433	436	parallel
Strand 9	A	461	463	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	161	first strand
Strand 2	A	164	170	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	199	first strand
Strand 2	A	202	206	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	A	413	414	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	627	first strand
Strand 2	A	583	588	parallel
Strand 3	A	544	549	parallel
Strand 4	A	644	647	parallel
Strand 5	A	669	672	parallel
Strand 6	A	691	692	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	192	first strand
Strand 2	B	209	221	anti-parallel
Strand 3	B	228	237	anti-parallel
Strand 4	B	144	149	parallel
Strand 5	B	71	75	parallel
Strand 6	B	315	320	parallel
Strand 7	B	354	357	parallel
Strand 8	B	433	436	parallel
Strand 9	B	461	463	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	161	first strand
Strand 2	B	164	170	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	199	first strand
Strand 2	B	202	206	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	B	413	414	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	626	first strand
Strand 2	B	583	588	parallel
Strand 3	B	544	549	parallel
Strand 4	B	644	647	parallel
Strand 5	B	669	672	parallel
Strand 6	B	691	692	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	192	first strand
Strand 2	C	209	221	anti-parallel
Strand 3	C	228	237	anti-parallel
Strand 4	C	144	149	parallel
Strand 5	C	71	75	parallel
Strand 6	C	315	320	parallel
Strand 7	C	354	357	parallel
Strand 8	C	433	436	parallel
Strand 9	C	461	463	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	161	first strand
Strand 2	C	164	170	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	199	first strand
Strand 2	C	202	206	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	413	414	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	622	627	first strand
Strand 2	C	583	588	parallel
Strand 3	C	544	549	parallel
Strand 4	C	644	647	parallel
Strand 5	C	669	672	parallel
Strand 6	C	691	692	parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	199	first strand
Strand 2	D	202	221	anti-parallel
Strand 3	D	228	238	anti-parallel
Strand 4	D	144	149	parallel
Strand 5	D	71	75	parallel
Strand 6	D	315	320	parallel
Strand 7	D	354	357	parallel
Strand 8	D	433	436	parallel
Strand 9	D	461	463	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	161	first strand
Strand 2	D	164	168	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	370	first strand
Strand 2	D	420	422	anti-parallel
Strand 3	D	413	414	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	622	627	first strand
Strand 2	D	583	588	parallel
Strand 3	D	544	549	parallel
Strand 4	D	644	647	parallel
Strand 5	D	669	672	parallel
Strand 6	D	691	692	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	7	first strand
Strand 2	E	60	66	anti-parallel
Strand 3	E	32	37	anti-parallel
Strand 4	E	40	43	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	60	66	anti-parallel
Strand 3	F	32	37	anti-parallel
Strand 4	F	40	43	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	7	first strand
Strand 2	G	60	66	anti-parallel
Strand 3	G	32	37	anti-parallel
Strand 4	G	40	43	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	60	66	anti-parallel
Strand 3	H	32	37	anti-parallel
Strand 4	H	40	43	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8K