Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S8L entry

There are 4 chains in PDB entry 9S8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	LEU 477
B	HIS 3	GLU 479
C	GLN 1	THR 511
D	GLN 1	THR 511

There are 43 helices in PDB entry 9S8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	37	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed alpha
Helix 3	AA3	A	49	69	Right-handed alpha
Helix 4	AA4	A	79	106	Right-handed alpha
Helix 5	AA5	A	110	139	Right-handed alpha
Helix 6	AA6	A	152	165	Right-handed alpha
Helix 7	AA7	A	200	205	Right-handed alpha
Helix 8	AA8	A	216	218	Right-handed 310
Helix 9	AA9	A	219	234	Right-handed alpha
Helix 10	AB1	A	273	307	Right-handed alpha
Helix 11	AB2	A	372	380	Right-handed alpha
Helix 12	AB3	A	382	393	Right-handed alpha
Helix 13	AB4	A	404	409	Right-handed alpha
Helix 14	AB5	A	414	421	Right-handed alpha
Helix 15	AB6	A	427	432	Right-handed alpha
Helix 16	AB7	A	442	447	Right-handed 310
Helix 17	AB8	A	448	452	Right-handed 310
Helix 18	AB9	A	454	477	Right-handed alpha
Helix 19	AC1	B	4	37	Right-handed alpha
Helix 20	AC2	B	39	44	Right-handed alpha
Helix 21	AC3	B	45	70	Right-handed alpha
Helix 22	AC4	B	79	106	Right-handed alpha
Helix 23	AC5	B	110	139	Right-handed alpha
Helix 24	AC6	B	152	165	Right-handed alpha
Helix 25	AC7	B	198	204	Right-handed alpha
Helix 26	AC8	B	216	218	Right-handed 310
Helix 27	AC9	B	219	234	Right-handed alpha
Helix 28	AD1	B	273	308	Right-handed alpha
Helix 29	AD2	B	322	324	Right-handed 310
Helix 30	AD3	B	372	380	Right-handed alpha
Helix 31	AD4	B	381	383	Right-handed 310
Helix 32	AD5	B	384	392	Right-handed alpha
Helix 33	AD6	B	404	409	Right-handed 310
Helix 34	AD7	B	414	420	Right-handed alpha
Helix 35	AD8	B	427	432	Right-handed alpha
Helix 36	AD9	B	441	452	Right-handed alpha
Helix 37	AE1	B	454	477	Right-handed alpha
Helix 38	AE2	C	472	476	Right-handed 310
Helix 39	AE3	C	491	497	Right-handed alpha
Helix 40	AE4	C	498	501	Right-handed 310
Helix 41	AE5	D	459	461	Right-handed 310
Helix 42	AE6	D	491	497	Right-handed alpha
Helix 43	AE7	D	498	501	Right-handed 310

There are 13 sheets in PDB entry 9S8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	170	176	parallel
Strand 3	A	144	149	parallel
Strand 4	A	210	213	parallel
Strand 5	A	238	240	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	262	264	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	320	first strand
Strand 2	A	326	332	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	A	424	426	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	196	first strand
Strand 2	B	171	177	parallel
Strand 3	B	145	149	parallel
Strand 4	B	210	213	parallel
Strand 5	B	238	240	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	262	264	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	320	first strand
Strand 2	B	326	332	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	424	426	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	406	408	anti-parallel
Strand 3	C	463	466	anti-parallel
Strand 4	C	455	458	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	445	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	418	423	anti-parallel
Strand 4	C	480	484	anti-parallel
Strand 5	C	503	504	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	404	409	anti-parallel
Strand 3	D	463	468	anti-parallel
Strand 4	D	453	458	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	445	first strand
Strand 2	D	431	436	anti-parallel
Strand 3	D	418	423	anti-parallel
Strand 4	D	477	484	anti-parallel
Strand 5	D	503	504	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	445	first strand
Strand 2	D	431	436	anti-parallel
Strand 3	D	418	423	anti-parallel
Strand 4	D	477	484	anti-parallel
Strand 5	D	508	510	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8L