Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9S8W entry

There are 3 chains in PDB entry 9S8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 159ILE 543
B
 GLN 36GLU 109
H
 GLN 20ASP 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9S8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 180Right-handed alpha
Helix 2
AA2
A
201 214Right-handed alpha
Helix 3
AA3
A
225 227Right-handed 310
Helix 4
AA4
A
228 234Right-handed alpha
Helix 5
AA5
A
238 255Right-handed alpha
Helix 6
AA6
A
272 287Right-handed alpha
Helix 7
AA7
A
306 311Right-handed alpha
Helix 8
AA8
A
312 317Right-handed alpha
Helix 9
AA9
A
317 332Right-handed alpha
Helix 10
AB1
A
358 360Right-handed 310
Helix 11
AB2
A
361 376Right-handed alpha
Helix 12
AB3
A
401 413Right-handed alpha
Helix 13
AB4
A
486 490Right-handed 310
Helix 14
AB5
A
539 543Right-handed 310
Helix 15
AB6
B
64 68Right-handed 310
Helix 16
AB7
B
70 76Right-handed alpha
Helix 17
AB8
B
77 87Right-handed alpha
Helix 18
AB9
B
96 100Right-handed 310
Helix 19
AC1
H
47 51Right-handed 310
Helix 20
AC2
H
81 84Right-handed 310
Helix 21
AC3
H
93 96Right-handed 310
Helix 22
AC4
H
106 110Right-handed 310
Helix 23
AC5
H
123 127Right-handed 310
Helix 24
AC6
H
216 221Right-handed alpha
Helix 25
AC7
L
102 106Right-handed 310
Helix 26
AC8
L
144 151Right-handed alpha
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There are 15 sheets in PDB entry 9S8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
B
102 104parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 188first strand
Strand 2
A
219 222parallel
Strand 3
A
263 268parallel
Strand 4
A
292 301parallel
Strand 5
A
338 348parallel
Strand 6
A
379 386parallel
Strand 7
B
57 62parallel
Strand 8
B
90 95parallel
Strand 9
A
182 188parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
475 482anti-parallel
Strand 4
A
514 515anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
475 482anti-parallel
Strand 4
A
528 534anti-parallel
Strand 5
A
450 456anti-parallel
Strand 6
A
431 438anti-parallel
Strand 7
A
414 418anti-parallel
Strand 8
B
50 51anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
B
38 44anti-parallel
Strand 3
A
462 465parallel
Strand 4
A
522 524anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 25first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
97 102anti-parallel
Strand 4
H
87 92anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
77 79first strand
Strand 2
H
65 70anti-parallel
Strand 3
H
53 58anti-parallel
Strand 4
H
111 115anti-parallel
Strand 5
H
137 139anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 154first strand
Strand 2
H
165 175anti-parallel
Strand 3
H
204 214anti-parallel
Strand 4
H
193 195anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 154first strand
Strand 2
H
165 175anti-parallel
Strand 3
H
204 214anti-parallel
Strand 4
H
199 201anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
181 183first strand
Strand 2
H
224 229anti-parallel
Strand 3
H
234 239anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 24first strand
Strand 2
L
38 44anti-parallel
Strand 3
L
93 98anti-parallel
Strand 4
L
86 90anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 33first strand
Strand 2
L
125 130parallel
Strand 3
L
108 113anti-parallel
Strand 4
L
56 61anti-parallel
Strand 5
L
69 72anti-parallel
Strand 6
L
76 77anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 33first strand
Strand 2
L
125 130parallel
Strand 3
L
108 113anti-parallel
Strand 4
L
120 121anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
139 141first strand
Strand 2
L
152 162anti-parallel
Strand 3
L
196 205anti-parallel
Strand 4
L
182 183anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
176 178first strand
Strand 2
L
168 173anti-parallel
Strand 3
L
214 220anti-parallel
Strand 4
L
228 233anti-parallel
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