Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S8X entry

There are 2 chains in PDB entry 9S8X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 23	PRO 1285
B	ALA 23	LYS 88

There are 54 helices in PDB entry 9S8X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	40	Right-handed 310
Helix 2	AA2	A	55	59	Right-handed 310
Helix 3	AA3	A	199	203	Right-handed 310
Helix 4	AA4	A	213	216	Right-handed 310
Helix 5	AA5	A	402	406	Right-handed 310
Helix 6	AA6	A	435	445	Right-handed alpha
Helix 7	AA7	A	520	525	Right-handed 310
Helix 8	AA8	A	526	531	Right-handed 310
Helix 9	AA9	A	542	551	Right-handed alpha
Helix 10	AB1	A	564	575	Right-handed alpha
Helix 11	AB2	A	598	606	Right-handed alpha
Helix 12	AB3	A	621	625	Right-handed 310
Helix 13	AB4	A	646	651	Right-handed 310
Helix 14	AB5	A	654	658	Right-handed 310
Helix 15	AB6	A	685	703	Right-handed alpha
Helix 16	AB7	A	772	776	Right-handed 310
Helix 17	AB8	A	779	806	Right-handed alpha
Helix 18	AB9	A	807	810	Right-handed 310
Helix 19	AC1	A	855	859	Right-handed alpha
Helix 20	AC2	A	882	894	Right-handed alpha
Helix 21	AC3	A	906	911	Right-handed alpha
Helix 22	AC4	A	913	917	Right-handed 310
Helix 23	AC5	A	939	943	Right-handed 310
Helix 24	AC6	A	991	1002	Right-handed alpha
Helix 25	AC7	A	1014	1019	Right-handed 310
Helix 26	AC8	A	1049	1053	Right-handed 310
Helix 27	AC9	A	1189	1191	Right-handed 310
Helix 28	AD1	B	38	40	Right-handed 310
Helix 29	AD2	B	55	59	Right-handed 310
Helix 30	AD3	B	199	203	Right-handed 310
Helix 31	AD4	B	213	216	Right-handed 310
Helix 32	AD5	B	402	406	Right-handed 310
Helix 33	AD6	B	435	445	Right-handed alpha
Helix 34	AD7	B	520	525	Right-handed 310
Helix 35	AD8	B	526	531	Right-handed 310
Helix 36	AD9	B	542	551	Right-handed alpha
Helix 37	AE1	B	564	575	Right-handed alpha
Helix 38	AE2	B	598	606	Right-handed alpha
Helix 39	AE3	B	621	625	Right-handed 310
Helix 40	AE4	B	646	651	Right-handed 310
Helix 41	AE5	B	654	658	Right-handed 310
Helix 42	AE6	B	685	703	Right-handed alpha
Helix 43	AE7	B	772	776	Right-handed 310
Helix 44	AE8	B	779	806	Right-handed alpha
Helix 45	AE9	B	808	810	Right-handed 310
Helix 46	AF1	B	855	859	Right-handed alpha
Helix 47	AF2	B	882	894	Right-handed alpha
Helix 48	AF3	B	906	912	Right-handed alpha
Helix 49	AF4	B	913	917	Right-handed 310
Helix 50	AF5	B	939	943	Right-handed 310
Helix 51	AF6	B	991	1002	Right-handed alpha
Helix 52	AF7	B	1014	1019	Right-handed 310
Helix 53	AF8	B	1049	1053	Right-handed 310
Helix 54	AF9	B	1189	1191	Right-handed 310

There are 36 sheets in PDB entry 9S8X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	42	44	anti-parallel
Strand 3	A	25	29	anti-parallel
Strand 4	A	62	66	parallel
Strand 5	A	84	92	parallel
Strand 6	A	115	125	parallel
Strand 7	A	141	144	parallel
Strand 8	A	173	176	parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	42	44	anti-parallel
Strand 3	A	25	29	anti-parallel
Strand 4	A	62	66	parallel
Strand 5	A	84	92	parallel
Strand 6	A	115	125	parallel
Strand 7	A	148	152	parallel
Strand 8	A	182	187	parallel
Strand 9	A	207	211	parallel
Strand 10	A	231	233	parallel
Strand 11	A	249	251	parallel
Strand 12	A	271	272	parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	137	139	parallel
Strand 3	A	157	160	parallel
Strand 4	A	191	194	parallel
Strand 5	A	219	221	parallel
Strand 6	A	236	240	parallel
Strand 7	A	256	265	parallel
Strand 8	A	277	286	parallel
Strand 9	A	294	299	parallel
Strand 10	A	311	315	parallel
Strand 11	A	333	336	parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	137	139	parallel
Strand 3	A	157	160	parallel
Strand 4	A	191	194	parallel
Strand 5	A	219	221	parallel
Strand 6	A	236	240	parallel
Strand 7	A	256	265	parallel
Strand 8	A	277	286	parallel
Strand 9	A	301	305	parallel
Strand 10	A	320	324	parallel
Strand 11	A	341	345	parallel
Strand 12	A	359	361	parallel
Strand 13	A	378	379	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	348	350	parallel
Strand 3	A	365	369	parallel
Strand 4	A	385	388	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	392	393	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	401	first strand
Strand 2	A	430	434	parallel
Strand 3	A	463	465	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	413	first strand
Strand 2	A	408	409	anti-parallel
Strand 3	A	447	454	anti-parallel
Strand 4	A	483	490	anti-parallel
Strand 5	A	472	478	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	662	664	anti-parallel
Strand 3	A	639	643	anti-parallel
Strand 4	A	609	615	parallel
Strand 5	A	710	715	parallel
Strand 6	A	506	512	parallel
Strand 7	A	812	818	parallel
Strand 8	A	863	866	anti-parallel
Strand 9	A	553	555	anti-parallel
Strand 10	A	874	876	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	861	first strand
Strand 2	A	558	559	anti-parallel
Strand 3	A	880	881	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	745	first strand
Strand 2	A	748	751	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	923	926	first strand
Strand 2	A	950	955	anti-parallel
Strand 3	A	958	962	anti-parallel
Strand 4	A	973	975	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1030	1032	first strand
Strand 2	A	1193	1196	anti-parallel
Strand 3	A	1079	1089	anti-parallel
Strand 4	A	1036	1040	anti-parallel
Strand 5	A	1059	1062	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1030	1032	first strand
Strand 2	A	1193	1196	anti-parallel
Strand 3	A	1079	1089	anti-parallel
Strand 4	A	1156	1166	anti-parallel
Strand 5	A	1108	1113	anti-parallel
Strand 6	A	1116	1121	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1132	first strand
Strand 2	A	1093	1101	anti-parallel
Strand 3	A	1151	1153	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1132	first strand
Strand 2	A	1093	1101	anti-parallel
Strand 3	A	1173	1178	anti-parallel
Strand 4	A	1186	1187	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1201	1203	first strand
Strand 2	A	1216	1223	anti-parallel
Strand 3	A	1247	1253	anti-parallel
Strand 4	A	1236	1239	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1207	1210	first strand
Strand 2	A	1273	1281	parallel
Strand 3	A	1262	1270	anti-parallel
Strand 4	A	1226	1231	anti-parallel
Strand 5	A	1242	1244	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	25	29	anti-parallel
Strand 4	B	62	66	parallel
Strand 5	B	84	92	parallel
Strand 6	B	115	125	parallel
Strand 7	B	141	144	parallel
Strand 8	B	173	176	parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	25	29	anti-parallel
Strand 4	B	62	66	parallel
Strand 5	B	84	92	parallel
Strand 6	B	115	125	parallel
Strand 7	B	148	152	parallel
Strand 8	B	182	187	parallel
Strand 9	B	207	211	parallel
Strand 10	B	231	233	parallel
Strand 11	B	249	251	parallel
Strand 12	B	271	272	parallel

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There are 11 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	137	139	parallel
Strand 3	B	157	160	parallel
Strand 4	B	191	194	parallel
Strand 5	B	219	221	parallel
Strand 6	B	236	240	parallel
Strand 7	B	256	265	parallel
Strand 8	B	277	286	parallel
Strand 9	B	294	299	parallel
Strand 10	B	311	315	parallel
Strand 11	B	333	336	parallel

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There are 13 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	137	139	parallel
Strand 3	B	157	160	parallel
Strand 4	B	191	194	parallel
Strand 5	B	219	221	parallel
Strand 6	B	236	240	parallel
Strand 7	B	256	265	parallel
Strand 8	B	277	286	parallel
Strand 9	B	301	305	parallel
Strand 10	B	320	324	parallel
Strand 11	B	341	345	parallel
Strand 12	B	359	361	parallel
Strand 13	B	378	379	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	348	350	parallel
Strand 3	B	365	369	parallel
Strand 4	B	385	388	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	392	393	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	401	first strand
Strand 2	B	430	434	parallel
Strand 3	B	463	465	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	413	first strand
Strand 2	B	408	409	anti-parallel
Strand 3	B	447	454	anti-parallel
Strand 4	B	483	490	anti-parallel
Strand 5	B	472	478	anti-parallel

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There are 10 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	675	first strand
Strand 2	B	662	664	anti-parallel
Strand 3	B	639	643	anti-parallel
Strand 4	B	609	615	parallel
Strand 5	B	710	715	parallel
Strand 6	B	506	512	parallel
Strand 7	B	812	818	parallel
Strand 8	B	863	866	anti-parallel
Strand 9	B	553	555	anti-parallel
Strand 10	B	874	876	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	860	861	first strand
Strand 2	B	558	559	anti-parallel
Strand 3	B	880	881	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	744	first strand
Strand 2	B	749	751	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	923	926	first strand
Strand 2	B	950	955	anti-parallel
Strand 3	B	958	962	anti-parallel
Strand 4	B	973	975	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1030	1032	first strand
Strand 2	B	1193	1196	anti-parallel
Strand 3	B	1079	1089	anti-parallel
Strand 4	B	1036	1040	anti-parallel
Strand 5	B	1059	1062	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1030	1032	first strand
Strand 2	B	1193	1196	anti-parallel
Strand 3	B	1079	1089	anti-parallel
Strand 4	B	1156	1166	anti-parallel
Strand 5	B	1108	1113	anti-parallel
Strand 6	B	1116	1121	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1131	1132	first strand
Strand 2	B	1093	1101	anti-parallel
Strand 3	B	1151	1153	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1131	1132	first strand
Strand 2	B	1093	1101	anti-parallel
Strand 3	B	1173	1178	anti-parallel
Strand 4	B	1186	1187	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1201	1203	first strand
Strand 2	B	1216	1223	anti-parallel
Strand 3	B	1247	1253	anti-parallel
Strand 4	B	1236	1239	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1207	1210	first strand
Strand 2	B	1273	1281	parallel
Strand 3	B	1262	1270	anti-parallel
Strand 4	B	1226	1231	anti-parallel
Strand 5	B	1242	1244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S8X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S8X