Analysis of interatomic Contacts of Structural Units in PDB entry:
9S9B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9S9B entry

There are 13 chains in PDB entry 9S9B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	THR 334
B	SER 2	THR 334
C	SER 2	THR 334
D	SER 2	THR 334
E	SER 2	THR 334
F	SER 2	THR 334
b	ARG 9	THR 334
c	ALA 2	LYS 81
e	ALA 2	LYS 81
h	ALA 2	LYS 81
j	ALA 2	LYS 81
m	ARG 5	ALA 53
o	ARG 5	ALA 53

There are 86 helices in PDB entry 9S9B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	44	Right-handed 310
Helix 2	AA2	A	100	106	Right-handed alpha
Helix 3	AA3	A	109	138	Right-handed alpha
Helix 4	AA4	A	164	185	Right-handed alpha
Helix 5	AA5	A	188	196	Right-handed alpha
Helix 6	AA6	A	201	209	Right-handed alpha
Helix 7	AA7	A	216	220	Right-handed 310
Helix 8	AA8	A	258	262	Right-handed 310
Helix 9	AA9	A	266	270	Right-handed 310
Helix 10	AB1	A	316	318	Right-handed 310
Helix 11	AB2	B	100	106	Right-handed alpha
Helix 12	AB3	B	109	138	Right-handed alpha
Helix 13	AB4	B	164	186	Right-handed alpha
Helix 14	AB5	B	188	196	Right-handed alpha
Helix 15	AB6	B	201	210	Right-handed alpha
Helix 16	AB7	B	211	216	Right-handed alpha
Helix 17	AB8	B	258	262	Right-handed 310
Helix 18	AB9	B	264	269	Right-handed alpha
Helix 19	AC1	B	316	318	Right-handed 310
Helix 20	AC2	C	3	7	Right-handed 310
Helix 21	AC3	C	40	44	Right-handed 310
Helix 22	AC4	C	100	106	Right-handed alpha
Helix 23	AC5	C	109	138	Right-handed alpha
Helix 24	AC6	C	164	186	Right-handed alpha
Helix 25	AC7	C	188	196	Right-handed alpha
Helix 26	AC8	C	201	210	Right-handed alpha
Helix 27	AC9	C	216	220	Right-handed 310
Helix 28	AD1	C	258	262	Right-handed 310
Helix 29	AD2	C	264	269	Right-handed alpha
Helix 30	AD3	C	316	318	Right-handed 310
Helix 31	AD4	D	3	7	Right-handed 310
Helix 32	AD5	D	100	106	Right-handed alpha
Helix 33	AD6	D	109	139	Right-handed alpha
Helix 34	AD7	D	164	186	Right-handed alpha
Helix 35	AD8	D	188	195	Right-handed alpha
Helix 36	AD9	D	201	209	Right-handed alpha
Helix 37	AE1	D	211	216	Right-handed alpha
Helix 38	AE2	D	217	220	Right-handed 310
Helix 39	AE3	D	258	262	Right-handed 310
Helix 40	AE4	D	264	269	Right-handed alpha
Helix 41	AE5	D	316	318	Right-handed 310
Helix 42	AE6	E	100	106	Right-handed alpha
Helix 43	AE7	E	109	139	Right-handed alpha
Helix 44	AE8	E	164	186	Right-handed alpha
Helix 45	AE9	E	188	196	Right-handed alpha
Helix 46	AF1	E	201	209	Right-handed alpha
Helix 47	AF2	E	211	216	Right-handed alpha
Helix 48	AF3	E	217	220	Right-handed 310
Helix 49	AF4	E	258	262	Right-handed 310
Helix 50	AF5	E	264	269	Right-handed alpha
Helix 51	AF6	E	276	280	Right-handed alpha
Helix 52	AF7	E	316	318	Right-handed 310
Helix 53	AF8	F	40	44	Right-handed 310
Helix 54	AF9	F	100	106	Right-handed alpha
Helix 55	AG1	F	110	139	Right-handed alpha
Helix 56	AG2	F	164	185	Right-handed alpha
Helix 57	AG3	F	188	196	Right-handed alpha
Helix 58	AG4	F	201	210	Right-handed alpha
Helix 59	AG5	F	211	216	Right-handed alpha
Helix 60	AG6	F	217	220	Right-handed 310
Helix 61	AG7	F	264	269	Right-handed alpha
Helix 62	AG8	F	276	280	Right-handed alpha
Helix 63	AG9	F	316	318	Right-handed 310
Helix 64	AH1	b	100	105	Right-handed alpha
Helix 65	AH2	b	109	138	Right-handed alpha
Helix 66	AH3	b	164	186	Right-handed alpha
Helix 67	AH4	b	188	193	Right-handed alpha
Helix 68	AH5	b	201	209	Right-handed alpha
Helix 69	AH6	b	258	262	Right-handed 310
Helix 70	AH7	b	264	269	Right-handed alpha
Helix 71	AH8	b	316	318	Right-handed 310
Helix 72	AH9	c	8	31	Right-handed alpha
Helix 73	AI1	c	58	80	Right-handed alpha
Helix 74	AI2	e	8	31	Right-handed alpha
Helix 75	AI3	e	58	80	Right-handed alpha
Helix 76	AI4	h	8	31	Right-handed alpha
Helix 77	AI5	h	58	80	Right-handed alpha
Helix 78	AI6	j	8	31	Right-handed alpha
Helix 79	AI7	j	58	80	Right-handed alpha
Helix 80	AI8	m	6	10	Right-handed alpha
Helix 81	AI9	m	11	27	Right-handed alpha
Helix 82	AJ1	m	41	50	Right-handed alpha
Helix 83	AJ2	o	8	11	Right-handed 310
Helix 84	AJ3	o	12	23	Right-handed alpha
Helix 85	AJ4	o	31	35	Right-handed 310
Helix 86	AJ5	o	41	50	Right-handed alpha

There are 39 sheets in PDB entry 9S9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	31	first strand
Strand 2	B	54	60	parallel
Strand 3	B	81	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	281	296	parallel
Strand 3	A	301	314	anti-parallel
Strand 4	A	91	99	anti-parallel
Strand 5	B	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	87	first strand
Strand 2	A	54	60	anti-parallel
Strand 3	F	25	31	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	F	91	99	anti-parallel
Strand 3	F	301	314	anti-parallel
Strand 4	F	281	296	anti-parallel
Strand 5	F	46	48	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	159	first strand
Strand 2	A	320	326	parallel
Strand 3	A	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	239	243	parallel
Strand 3	A	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	31	first strand
Strand 2	C	54	60	parallel
Strand 3	C	81	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	281	296	parallel
Strand 3	B	301	314	anti-parallel
Strand 4	B	91	99	anti-parallel
Strand 5	C	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	320	326	parallel
Strand 3	B	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	200	first strand
Strand 2	B	239	243	parallel
Strand 3	B	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	C	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	D	54	60	parallel
Strand 3	D	81	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	281	296	parallel
Strand 3	C	301	314	anti-parallel
Strand 4	C	90	99	anti-parallel
Strand 5	D	66	69	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	320	326	parallel
Strand 3	C	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	200	first strand
Strand 2	C	239	243	parallel
Strand 3	C	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	13	first strand
Strand 2	D	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	31	first strand
Strand 2	E	54	60	parallel
Strand 3	E	81	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	281	296	parallel
Strand 3	D	301	314	anti-parallel
Strand 4	D	91	99	anti-parallel
Strand 5	E	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	159	first strand
Strand 2	D	320	326	parallel
Strand 3	D	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	200	first strand
Strand 2	D	239	243	parallel
Strand 3	D	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	25	31	first strand
Strand 2	F	54	60	parallel
Strand 3	F	81	87	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	281	296	parallel
Strand 3	E	301	314	anti-parallel
Strand 4	E	91	99	anti-parallel
Strand 5	F	66	68	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	159	first strand
Strand 2	E	320	326	parallel
Strand 3	E	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	200	first strand
Strand 2	E	239	243	parallel
Strand 3	E	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	13	first strand
Strand 2	F	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	159	first strand
Strand 2	F	320	326	parallel
Strand 3	F	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	200	first strand
Strand 2	F	239	243	parallel
Strand 3	F	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	12	13	first strand
Strand 2	b	19	20	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	46	48	first strand
Strand 2	b	281	285	parallel
Strand 3	b	312	314	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	54	60	first strand
Strand 2	b	81	87	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	91	99	first strand
Strand 2	b	301	309	anti-parallel
Strand 3	b	287	296	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	154	159	first strand
Strand 2	b	320	326	parallel
Strand 3	b	272	275	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	197	200	first strand
Strand 2	b	239	243	parallel
Strand 3	b	235	236	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	35	41	first strand
Strand 2	c	51	57	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	35	41	first strand
Strand 2	e	51	57	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	35	42	first strand
Strand 2	h	50	57	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	35	42	first strand
Strand 2	j	50	57	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9S9B

Analysis of interatomic Contacts of Structural Units in PDB entry:
9S9B