Analysis of interatomic Contacts of Structural Units in PDB entry:
9SBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SBB entry

There are 3 chains in PDB entry 9SBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	PRO 224
L	GLN 1	PRO 213
R	ASN 334	PRO 527

There are 17 helices in PDB entry 9SBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	62	65	Right-handed 310
Helix 3	AA3	H	74	76	Right-handed 310
Helix 4	AA4	H	87	91	Right-handed 310
Helix 5	AA5	H	167	169	Right-handed 310
Helix 6	AA6	H	212	215	Right-handed 310
Helix 7	AA7	L	81	85	Right-handed 310
Helix 8	AA8	L	126	132	Right-handed alpha
Helix 9	AA9	L	186	193	Right-handed alpha
Helix 10	AB1	R	337	343	Right-handed alpha
Helix 11	AB2	R	349	353	Right-handed 310
Helix 12	AB3	R	364	369	Right-handed alpha
Helix 13	AB4	R	385	389	Right-handed 310
Helix 14	AB5	R	405	410	Right-handed 310
Helix 15	AB6	R	416	422	Right-handed alpha
Helix 16	AB7	R	438	443	Right-handed alpha
Helix 17	AB8	R	502	505	Right-handed 310

There are 16 sheets in PDB entry 9SBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	117	121	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	110	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	147	156	anti-parallel
Strand 3	H	187	195	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	135	first strand
Strand 2	H	147	156	anti-parallel
Strand 3	H	187	195	anti-parallel
Strand 4	H	180	181	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	205	211	anti-parallel
Strand 3	H	216	222	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	100	102	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	164	166	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	135	144	anti-parallel
Strand 3	L	177	185	anti-parallel
Strand 4	L	170	171	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	159	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	201	anti-parallel
Strand 4	L	206	211	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	358	first strand
Strand 2	R	394	403	anti-parallel
Strand 3	R	507	516	anti-parallel
Strand 4	R	431	437	anti-parallel
Strand 5	R	376	380	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	361	362	first strand
Strand 2	R	524	525	parallel
Strand 3	R	391	392	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SBB