Analysis of interatomic Contacts of Structural Units in PDB entry:
9SBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SBF entry

There are 4 chains in PDB entry 9SBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 400ASN 480
B
 GLY 400ASN 480
C
 ALA 401THR 479
D
 GLY 400ASN 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9SBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
414 423Right-handed alpha
Helix 2
AA2
A
424 426Right-handed 310
Helix 3
AA3
A
452 464Right-handed alpha
Helix 4
AA4
B
414 423Right-handed alpha
Helix 5
AA5
B
424 426Right-handed 310
Helix 6
AA6
B
452 464Right-handed alpha
Helix 7
AA7
C
414 423Right-handed alpha
Helix 8
AA8
C
424 426Right-handed 310
Helix 9
AA9
C
452 464Right-handed alpha
Helix 10
AB1
D
414 423Right-handed alpha
Helix 11
AB2
D
424 426Right-handed 310
Helix 12
AB3
D
452 464Right-handed alpha
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There are 4 sheets in PDB entry 9SBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 434first strand
Strand 2
A
445 450anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
474 476anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 433first strand
Strand 2
B
446 450anti-parallel
Strand 3
B
402 407anti-parallel
Strand 4
B
474 476anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
428 433first strand
Strand 2
C
444 450anti-parallel
Strand 3
C
402 409anti-parallel
Strand 4
C
474 476anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
428 434first strand
Strand 2
D
444 450anti-parallel
Strand 3
D
402 409anti-parallel
Strand 4
D
474 476anti-parallel
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