Analysis of interatomic Contacts of Structural Units in PDB entry:
9SD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SD5 entry

There is 1 chain in PDB entry 9SD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6PRO 691
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9SD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
85 87Right-handed 310
Helix 4
AA4
A
207 224Right-handed alpha
Helix 5
AA5
A
226 242Right-handed alpha
Helix 6
AA6
A
249 266Right-handed alpha
Helix 7
AA7
A
299 306Right-handed alpha
Helix 8
AA8
A
306 314Right-handed alpha
Helix 9
AA9
A
314 328Right-handed alpha
Helix 10
AB1
A
328 339Right-handed alpha
Helix 11
AB2
A
360 367Right-handed alpha
Helix 12
AB3
A
369 385Right-handed alpha
Helix 13
AB4
A
388 393Right-handed alpha
Helix 14
AB5
A
395 411Right-handed alpha
Helix 15
AB6
A
438 459Right-handed alpha
Helix 16
AB7
A
464 474Right-handed alpha
Helix 17
AB8
A
501 505Right-handed 310
Helix 18
AB9
A
514 527Right-handed alpha
Helix 19
AC1
A
537 548Right-handed alpha
Helix 20
AC2
A
550 562Right-handed alpha
Helix 21
AC3
A
584 597Right-handed alpha
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There are 8 sheets in PDB entry 9SD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
98 106anti-parallel
Strand 5
A
113 122anti-parallel
Strand 6
A
195 205anti-parallel
Strand 7
A
175 180anti-parallel
Strand 8
A
156 163anti-parallel
Strand 9
A
145 153anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
31 34anti-parallel
Strand 3
A
39 42anti-parallel
Strand 4
A
58 59anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
54 55anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
186 189anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 247first strand
Strand 2
A
621 629anti-parallel
Strand 3
A
632 639anti-parallel
Strand 4
A
642 650anti-parallel
Strand 5
A
677 679anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
419 421anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
435 436anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 605first strand
Strand 2
A
608 611anti-parallel
Strand 3
A
684 688anti-parallel
Strand 4
A
658 662anti-parallel
Strand 5
A
668 671anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il