Analysis of interatomic Contacts of Structural Units in PDB entry:
9SDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SDD entry

There are 2 chains in PDB entry 9SDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 1538LEU 2059
C
 ALA 982VAL 1503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9SDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1542 1552Right-handed alpha
Helix 2
AA2
B
1572 1576Right-handed 310
Helix 3
AA3
B
1584 1588Right-handed 310
Helix 4
AA4
B
1590 1598Right-handed alpha
Helix 5
AA5
B
1614 1623Right-handed alpha
Helix 6
AA6
B
1636 1651Right-handed alpha
Helix 7
AA7
B
1669 1681Right-handed alpha
Helix 8
AA8
B
1694 1703Right-handed alpha
Helix 9
AA9
B
1725 1734Right-handed alpha
Helix 10
AB1
B
1737 1747Right-handed alpha
Helix 11
AB2
B
1751 1759Right-handed alpha
Helix 12
AB3
B
1781 1801Right-handed alpha
Helix 13
AB4
B
1818 1828Right-handed alpha
Helix 14
AB5
B
1836 1841Right-handed alpha
Helix 15
AB6
B
1848 1856Right-handed alpha
Helix 16
AB7
B
1886 1901Right-handed alpha
Helix 17
AB8
B
1908 1919Right-handed alpha
Helix 18
AB9
B
1923 1938Right-handed alpha
Helix 19
AC1
B
1941 1949Right-handed alpha
Helix 20
AC2
B
1951 1974Right-handed alpha
Helix 21
AC3
B
1978 1982Right-handed 310
Helix 22
AC4
B
1988 1998Right-handed alpha
Helix 23
AC5
B
2003 2008Right-handed alpha
Helix 24
AC6
B
2012 2035Right-handed alpha
Helix 25
AC7
B
2039 2048Right-handed alpha
Helix 26
AC8
C
986 995Right-handed alpha
Helix 27
AC9
C
1030 1034Right-handed 310
Helix 28
AD1
C
1036 1044Right-handed alpha
Helix 29
AD2
C
1060 1070Right-handed alpha
Helix 30
AD3
C
1082 1097Right-handed alpha
Helix 31
AD4
C
1109 1112Right-handed 310
Helix 32
AD5
C
1115 1127Right-handed alpha
Helix 33
AD6
C
1140 1150Right-handed alpha
Helix 34
AD7
C
1171 1180Right-handed alpha
Helix 35
AD8
C
1183 1193Right-handed alpha
Helix 36
AD9
C
1197 1205Right-handed alpha
Helix 37
AE1
C
1227 1247Right-handed alpha
Helix 38
AE2
C
1264 1274Right-handed alpha
Helix 39
AE3
C
1282 1286Right-handed 310
Helix 40
AE4
C
1294 1302Right-handed alpha
Helix 41
AE5
C
1332 1347Right-handed alpha
Helix 42
AE6
C
1349 1353Right-handed 310
Helix 43
AE7
C
1354 1365Right-handed alpha
Helix 44
AE8
C
1369 1379Right-handed alpha
Helix 45
AE9
C
1387 1397Right-handed alpha
Helix 46
AF1
C
1397 1420Right-handed alpha
Helix 47
AF2
C
1421 1428Right-handed 310
Helix 48
AF3
C
1434 1444Right-handed alpha
Helix 49
AF4
C
1449 1454Right-handed alpha
Helix 50
AF5
C
1458 1482Right-handed alpha
Helix 51
AF6
C
1491 1495Right-handed 310
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There are 8 sheets in PDB entry 9SDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1569 1570first strand
Strand 2
B
1557 1560anti-parallel
Strand 3
B
1578 1580anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1603 1605first strand
Strand 2
B
1627 1630parallel
Strand 3
B
1657 1661parallel
Strand 4
B
1684 1688parallel
Strand 5
B
1718 1723parallel
Strand 6
B
1766 1770parallel
Strand 7
B
1809 1813parallel
Strand 8
B
1833 1835parallel
Strand 9
B
1603 1605parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1705 1707first strand
Strand 2
B
1713 1715anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1863 1867first strand
Strand 2
B
1877 1881anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
983 985first strand
Strand 2
C
1012 1014anti-parallel
Strand 3
C
1001 1005anti-parallel
Strand 4
C
1024 1026anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1049 1051first strand
Strand 2
C
1073 1076parallel
Strand 3
C
1103 1107parallel
Strand 4
C
1130 1134parallel
Strand 5
C
1164 1169parallel
Strand 6
C
1212 1216parallel
Strand 7
C
1255 1259parallel
Strand 8
C
1279 1281parallel
Strand 9
C
1049 1051parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1151 1153first strand
Strand 2
C
1159 1161anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1309 1313first strand
Strand 2
C
1323 1327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il