Analysis of interatomic Contacts of Structural Units in PDB entry:
9SDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SDH entry

There are 2 chains in PDB entry 9SDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11SER 462
B
 LEU 11SER 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9SDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 78Right-handed alpha
Helix 2
AA2
A
81 86Right-handed alpha
Helix 3
AA3
A
89 119Right-handed alpha
Helix 4
AA4
A
119 124Right-handed alpha
Helix 5
AA5
A
127 129Right-handed 310
Helix 6
AA6
A
130 154Right-handed alpha
Helix 7
AA7
A
163 179Right-handed alpha
Helix 8
AA8
A
185 217Right-handed alpha
Helix 9
AA9
A
223 254Right-handed alpha
Helix 10
AB1
A
258 281Right-handed alpha
Helix 11
AB2
A
288 301Right-handed alpha
Helix 12
AB3
A
307 315Right-handed alpha
Helix 13
AB4
A
332 337Right-handed alpha
Helix 14
AB5
A
339 348Right-handed alpha
Helix 15
AB6
A
374 392Right-handed alpha
Helix 16
AB7
A
398 411Right-handed alpha
Helix 17
AB8
A
415 441Right-handed alpha
Helix 18
AB9
B
71 78Right-handed alpha
Helix 19
AC1
B
81 86Right-handed alpha
Helix 20
AC2
B
89 118Right-handed alpha
Helix 21
AC3
B
134 154Right-handed alpha
Helix 22
AC4
B
155 159Right-handed 310
Helix 23
AC5
B
160 179Right-handed alpha
Helix 24
AC6
B
187 215Right-handed alpha
Helix 25
AC7
B
216 219Right-handed 310
Helix 26
AC8
B
223 253Right-handed alpha
Helix 27
AC9
B
262 282Right-handed alpha
Helix 28
AD1
B
288 303Right-handed alpha
Helix 29
AD2
B
307 315Right-handed alpha
Helix 30
AD3
B
332 336Right-handed 310
Helix 31
AD4
B
339 348Right-handed alpha
Helix 32
AD5
B
374 392Right-handed alpha
Helix 33
AD6
B
398 411Right-handed alpha
Helix 34
AD7
B
415 441Right-handed alpha
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There are 5 sheets in PDB entry 9SDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
B
455 457anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
32 33anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
364 370parallel
Strand 3
A
354 359anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
364 370parallel
Strand 3
A
455 459parallel
Strand 4
B
12 16anti-parallel
Strand 5
B
22 26anti-parallel
Strand 6
B
32 34anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
364 369parallel
Strand 3
B
354 359anti-parallel
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