Analysis of interatomic Contacts of Structural Units in PDB entry:
9SDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9SDV entry

There is 1 chain in PDB entry 9SDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19LYS 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9SDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 30Right-handed 310
Helix 2
AA2
A
31 37Right-handed alpha
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
57 60Right-handed 310
Helix 5
AA5
A
81 92Right-handed alpha
Helix 6
AA6
A
111 120Right-handed alpha
Helix 7
AA7
A
135 142Right-handed alpha
Helix 8
AA8
A
157 171Right-handed alpha
Helix 9
AA9
A
209 214Right-handed 310
Helix 10
AB1
A
216 236Right-handed alpha
Helix 11
AB2
A
236 242Right-handed alpha
Helix 12
AB3
A
246 260Right-handed alpha
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There are 3 sheets in PDB entry 9SDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
20 25parallel
Strand 3
A
123 127parallel
Strand 4
A
99 103parallel
Strand 5
A
145 148parallel
Strand 6
A
108 109parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
79 80anti-parallel
Strand 3
A
133 134parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
206 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il