Analysis of interatomic Contacts of Structural Units in PDB entry:
9SE5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9SE5 entry

There is 1 chain in PDB entry 9SE5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 250	ASN 1917

There are 29 helices in PDB entry 9SE5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	322	328	Right-handed alpha
Helix 2	AA2	A	355	360	Right-handed alpha
Helix 3	AA3	A	414	418	Right-handed 310
Helix 4	AA4	A	566	570	Right-handed 310
Helix 5	AA5	A	614	618	Right-handed 310
Helix 6	AA6	A	735	765	Right-handed alpha
Helix 7	AA7	A	769	792	Right-handed alpha
Helix 8	AA8	A	802	829	Right-handed alpha
Helix 9	AA9	A	834	854	Right-handed alpha
Helix 10	AB1	A	908	918	Right-handed 310
Helix 11	AB2	A	934	939	Right-handed 310
Helix 12	AB3	A	1114	1119	Right-handed 310
Helix 13	AB4	A	1209	1213	Right-handed 310
Helix 14	AB5	A	1224	1228	Right-handed 310
Helix 15	AB6	A	1239	1243	Right-handed 310
Helix 16	AB7	A	1322	1342	Right-handed alpha
Helix 17	AB8	A	1409	1414	Right-handed alpha
Helix 18	AB9	A	1415	1418	Right-handed 310
Helix 19	AC1	A	1460	1469	Right-handed alpha
Helix 20	AC2	A	1524	1527	Right-handed 310
Helix 21	AC3	A	1575	1580	Right-handed alpha
Helix 22	AC4	A	1596	1600	Right-handed 310
Helix 23	AC5	A	1606	1618	Right-handed alpha
Helix 24	AC6	A	1655	1665	Right-handed alpha
Helix 25	AC7	A	1666	1669	Right-handed 310
Helix 26	AC8	A	1763	1768	Right-handed alpha
Helix 27	AC9	A	1860	1864	Right-handed 310
Helix 28	AD1	A	1874	1879	Right-handed alpha
Helix 29	AD2	A	1912	1916	Right-handed 310

There are 23 sheets in PDB entry 9SE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	321	first strand
Strand 2	A	266	278	anti-parallel
Strand 3	A	386	395	anti-parallel
Strand 4	A	365	372	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	330	337	anti-parallel
Strand 4	A	346	354	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	555	first strand
Strand 2	A	578	590	anti-parallel
Strand 3	A	430	441	anti-parallel
Strand 4	A	491	501	anti-parallel
Strand 5	A	606	609	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	480	first strand
Strand 2	A	468	474	anti-parallel
Strand 3	A	508	515	anti-parallel
Strand 4	A	522	530	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	714	716	anti-parallel
Strand 3	A	621	637	anti-parallel
Strand 4	A	923	932	anti-parallel
Strand 5	A	899	904	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	714	716	anti-parallel
Strand 3	A	621	637	anti-parallel
Strand 4	A	722	733	anti-parallel
Strand 5	A	965	968	anti-parallel
Strand 6	A	947	950	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	863	869	anti-parallel
Strand 3	A	649	651	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	863	869	anti-parallel
Strand 3	A	872	879	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1023	1033	first strand
Strand 2	A	971	984	anti-parallel
Strand 3	A	1107	1110	anti-parallel
Strand 4	A	1070	1072	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1023	1033	first strand
Strand 2	A	971	984	anti-parallel
Strand 3	A	1101	1104	anti-parallel
Strand 4	A	1088	1089	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1009	first strand
Strand 2	A	997	1003	anti-parallel
Strand 3	A	1046	1053	anti-parallel
Strand 4	A	1059	1067	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1093	1094	first strand
Strand 2	A	1097	1098	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1199	1207	first strand
Strand 2	A	1144	1157	anti-parallel
Strand 3	A	1444	1455	anti-parallel
Strand 4	A	1422	1427	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1170	1175	first strand
Strand 2	A	1217	1222	anti-parallel
Strand 3	A	1230	1235	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1535	1545	first strand
Strand 2	A	1486	1497	anti-parallel
Strand 3	A	1697	1707	anti-parallel
Strand 4	A	1682	1686	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1522	first strand
Strand 2	A	1510	1516	anti-parallel
Strand 3	A	1553	1558	anti-parallel
Strand 4	A	1566	1572	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1624	1625	first strand
Strand 2	A	1630	1633	anti-parallel
Strand 3	A	1636	1639	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1643	1645	first strand
Strand 2	A	1651	1653	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1782	1787	first strand
Strand 2	A	1726	1737	anti-parallel
Strand 3	A	1790	1795	anti-parallel
Strand 4	A	1800	1805	anti-parallel
Strand 5	A	1815	1820	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1782	1787	first strand
Strand 2	A	1726	1737	anti-parallel
Strand 3	A	1898	1910	anti-parallel
Strand 4	A	1880	1888	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1743	1744	first strand
Strand 2	A	1751	1752	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1769	1770	first strand
Strand 2	A	1755	1760	anti-parallel
Strand 3	A	1823	1829	anti-parallel
Strand 4	A	1837	1844	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1849	1850	first strand
Strand 2	A	1872	1873	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9SE5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9SE5